Hb_029584_020

Information

Type -
Description -
Location Contig29584: 8901-10465
Sequence    

Annotation

kegg
ID rcu:RCOM_1048090
description hypothetical protein
nr
ID XP_002514157.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000530_060 0.0221834736 - - -
3 Hb_003805_110 0.0257760213 - - PREDICTED: laccase-11-like [Jatropha curcas]
4 Hb_081344_010 0.0317911584 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_000433_040 0.0352012939 - - -
6 Hb_000152_300 0.0391233989 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_010666_020 0.0460049391 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
8 Hb_003093_050 0.0476024308 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
9 Hb_004818_010 0.0481305888 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
10 Hb_001089_120 0.0507749119 - - PREDICTED: pectinesterase [Jatropha curcas]
11 Hb_158597_010 0.0556249444 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_000504_220 0.0588309287 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
13 Hb_001097_110 0.0589046429 - - gibberellin 20-oxidase, putative [Ricinus communis]
14 Hb_000140_040 0.0593839134 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
15 Hb_001140_110 0.0624762277 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
16 Hb_180094_010 0.0629630082 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
17 Hb_003058_150 0.0635195978 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
18 Hb_127349_020 0.0646444438 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_004143_080 0.0666796572 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
20 Hb_001951_050 0.0700998185 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_029584_020 Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_029584_020--Hb_000530_060 Hb_003805_110 Hb_003805_110 Hb_029584_020--Hb_003805_110 Hb_081344_010 Hb_081344_010 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_001089_120 Hb_001089_120 Hb_000530_060--Hb_001089_120 Hb_000530_060--Hb_003805_110 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_003093_050 Hb_003093_050 Hb_000530_060--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000530_060--Hb_004818_010 Hb_003058_150 Hb_003058_150 Hb_003805_110--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_003805_110--Hb_001140_110 Hb_001097_110 Hb_001097_110 Hb_003805_110--Hb_001097_110 Hb_003805_110--Hb_081344_010 Hb_081344_010--Hb_000433_040 Hb_081344_010--Hb_000152_300 Hb_081344_010--Hb_010666_020 Hb_127349_020 Hb_127349_020 Hb_081344_010--Hb_127349_020 Hb_158597_010 Hb_158597_010 Hb_081344_010--Hb_158597_010 Hb_000433_040--Hb_000152_300 Hb_000433_040--Hb_010666_020 Hb_000433_040--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_000433_040--Hb_180094_010 Hb_000152_300--Hb_010666_020 Hb_000152_300--Hb_127349_020 Hb_000152_300--Hb_180094_010 Hb_010666_020--Hb_127349_020 Hb_010666_020--Hb_180094_010 Hb_010666_020--Hb_158597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0606884 0.0691942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.38588

CAGE analysis