Hb_000530_060

Information

Type -
Description -
Location Contig530: 98524-105128
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000530_060 0.0 - - -
2 Hb_029584_020 0.0221834736 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001089_120 0.0290227509 - - PREDICTED: pectinesterase [Jatropha curcas]
4 Hb_003805_110 0.0352007002 - - PREDICTED: laccase-11-like [Jatropha curcas]
5 Hb_000504_220 0.0393579375 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
6 Hb_003093_050 0.0495543543 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
7 Hb_004818_010 0.0497427878 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
8 Hb_081344_010 0.0513648323 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_000433_040 0.0545794543 - - -
10 Hb_000152_300 0.060242715 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_001140_110 0.0620393849 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
12 Hb_000608_160 0.0638632778 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_010666_020 0.0654207086 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
14 Hb_158597_010 0.065550452 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_101097_010 0.065932851 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_003058_150 0.0662422407 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
17 Hb_001097_110 0.0690270393 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_001951_050 0.0711249128 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_000629_110 0.0756554797 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
20 Hb_000704_020 0.076809241 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000530_060 Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_000530_060--Hb_029584_020 Hb_001089_120 Hb_001089_120 Hb_000530_060--Hb_001089_120 Hb_003805_110 Hb_003805_110 Hb_000530_060--Hb_003805_110 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_003093_050 Hb_003093_050 Hb_000530_060--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000530_060--Hb_004818_010 Hb_029584_020--Hb_003805_110 Hb_081344_010 Hb_081344_010 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_001089_120--Hb_000504_220 Hb_001089_120--Hb_029584_020 Hb_000608_160 Hb_000608_160 Hb_001089_120--Hb_000608_160 Hb_003251_010 Hb_003251_010 Hb_001089_120--Hb_003251_010 Hb_001089_120--Hb_003805_110 Hb_003058_150 Hb_003058_150 Hb_003805_110--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_003805_110--Hb_001140_110 Hb_001097_110 Hb_001097_110 Hb_003805_110--Hb_001097_110 Hb_003805_110--Hb_081344_010 Hb_043327_010 Hb_043327_010 Hb_000504_220--Hb_043327_010 Hb_000504_220--Hb_003805_110 Hb_000504_220--Hb_029584_020 Hb_005171_020 Hb_005171_020 Hb_000504_220--Hb_005171_020 Hb_003093_050--Hb_004818_010 Hb_003093_050--Hb_029584_020 Hb_000629_110 Hb_000629_110 Hb_003093_050--Hb_000629_110 Hb_004143_080 Hb_004143_080 Hb_003093_050--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_003093_050--Hb_000704_020 Hb_004818_010--Hb_000704_020 Hb_004818_010--Hb_004143_080 Hb_004818_010--Hb_029584_020 Hb_000815_120 Hb_000815_120 Hb_004818_010--Hb_000815_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.155016 0.168781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.08391

CAGE analysis