Hb_043327_010

Information

Type -
Description -
Location Contig43327: 147-761
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012466483.1
description PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067L4H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043327_010 0.0 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
2 Hb_005171_020 0.0101690375 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
3 Hb_006272_010 0.0294128381 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
4 Hb_002997_060 0.0399171529 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
5 Hb_001715_050 0.0458298281 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
6 Hb_000504_220 0.0506533251 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
7 Hb_183479_030 0.051421021 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
8 Hb_003228_060 0.0556694676 - - conserved hypothetical protein [Ricinus communis]
9 Hb_083242_040 0.055984927 - - -
10 Hb_000696_200 0.0610035128 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
11 Hb_001089_120 0.0653704113 - - PREDICTED: pectinesterase [Jatropha curcas]
12 Hb_008489_030 0.0718835155 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_007594_020 0.0723106451 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
14 Hb_003251_010 0.076416613 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
15 Hb_000893_040 0.0776026926 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
16 Hb_003947_020 0.0807024889 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_000608_160 0.0823043357 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_003952_030 0.0862156 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
19 Hb_048694_010 0.0875458791 - - catalytic, putative [Ricinus communis]
20 Hb_000530_060 0.0882970311 - - -

Gene co-expression network

sample Hb_043327_010 Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_043327_010--Hb_005171_020 Hb_006272_010 Hb_006272_010 Hb_043327_010--Hb_006272_010 Hb_002997_060 Hb_002997_060 Hb_043327_010--Hb_002997_060 Hb_001715_050 Hb_001715_050 Hb_043327_010--Hb_001715_050 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220 Hb_183479_030 Hb_183479_030 Hb_043327_010--Hb_183479_030 Hb_005171_020--Hb_006272_010 Hb_005171_020--Hb_001715_050 Hb_005171_020--Hb_002997_060 Hb_083242_040 Hb_083242_040 Hb_005171_020--Hb_083242_040 Hb_003228_060 Hb_003228_060 Hb_005171_020--Hb_003228_060 Hb_006272_010--Hb_001715_050 Hb_006272_010--Hb_083242_040 Hb_006272_010--Hb_003228_060 Hb_006272_010--Hb_183479_030 Hb_008489_030 Hb_008489_030 Hb_002997_060--Hb_008489_030 Hb_000696_200 Hb_000696_200 Hb_002997_060--Hb_000696_200 Hb_002997_060--Hb_003228_060 Hb_000893_040 Hb_000893_040 Hb_002997_060--Hb_000893_040 Hb_001715_050--Hb_083242_040 Hb_001715_050--Hb_003228_060 Hb_001715_050--Hb_000696_200 Hb_001089_120 Hb_001089_120 Hb_000504_220--Hb_001089_120 Hb_000530_060 Hb_000530_060 Hb_000504_220--Hb_000530_060 Hb_003805_110 Hb_003805_110 Hb_000504_220--Hb_003805_110 Hb_029584_020 Hb_029584_020 Hb_000504_220--Hb_029584_020 Hb_000504_220--Hb_005171_020 Hb_183479_030--Hb_005171_020 Hb_003952_030 Hb_003952_030 Hb_183479_030--Hb_003952_030 Hb_002600_110 Hb_002600_110 Hb_183479_030--Hb_002600_110 Hb_183479_030--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0339347 0.0449582 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.445954

CAGE analysis