Hb_083242_040

Information

Type -
Description -
Location Contig83242: 43563-44514
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083242_040 0.0 - - -
2 Hb_001715_050 0.0107944501 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
3 Hb_003228_060 0.0169813567 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000696_200 0.0329789571 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
5 Hb_006272_010 0.0333897349 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
6 Hb_005171_020 0.0469129183 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
7 Hb_034168_060 0.0496253005 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
8 Hb_006331_010 0.0524812774 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
9 Hb_002997_060 0.0549472796 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
10 Hb_043327_010 0.055984927 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
11 Hb_048694_010 0.0721851912 - - catalytic, putative [Ricinus communis]
12 Hb_183479_030 0.0733704888 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
13 Hb_001081_070 0.07465658 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
14 Hb_009095_020 0.0754272891 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
15 Hb_004138_020 0.0763595085 - - PREDICTED: cucumisin-like [Populus euphratica]
16 Hb_003947_020 0.0850683614 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_008489_030 0.0858989877 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_007645_040 0.0891605042 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
19 Hb_003952_030 0.0897474021 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
20 Hb_015981_010 0.0936528121 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_083242_040 Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_083242_040--Hb_001715_050 Hb_003228_060 Hb_003228_060 Hb_083242_040--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_083242_040--Hb_000696_200 Hb_006272_010 Hb_006272_010 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020 Hb_034168_060 Hb_034168_060 Hb_083242_040--Hb_034168_060 Hb_001715_050--Hb_003228_060 Hb_001715_050--Hb_006272_010 Hb_001715_050--Hb_000696_200 Hb_001715_050--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_001715_050--Hb_043327_010 Hb_003228_060--Hb_000696_200 Hb_003228_060--Hb_006272_010 Hb_002997_060 Hb_002997_060 Hb_003228_060--Hb_002997_060 Hb_003228_060--Hb_034168_060 Hb_000696_200--Hb_002997_060 Hb_000696_200--Hb_034168_060 Hb_000696_200--Hb_006272_010 Hb_006272_010--Hb_005171_020 Hb_006272_010--Hb_043327_010 Hb_183479_030 Hb_183479_030 Hb_006272_010--Hb_183479_030 Hb_005171_020--Hb_043327_010 Hb_005171_020--Hb_002997_060 Hb_005171_020--Hb_003228_060 Hb_034168_060--Hb_001715_050 Hb_007645_040 Hb_007645_040 Hb_034168_060--Hb_007645_040 Hb_006331_010 Hb_006331_010 Hb_034168_060--Hb_006331_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0516719 0.0845844 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.12604

CAGE analysis