Hb_006331_010

Information

Type -
Description -
Location Contig6331: 1614-3657
Sequence    

Annotation

kegg
ID cmo:103485790
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A0A0LUY4
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G070620 PE=4 SV=1
Gene Ontology
ID GO:0048544
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006331_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_048694_010 0.0488751057 - - catalytic, putative [Ricinus communis]
3 Hb_001081_070 0.0521113777 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_083242_040 0.0524812774 - - -
5 Hb_004138_020 0.0557913628 - - PREDICTED: cucumisin-like [Populus euphratica]
6 Hb_001715_050 0.0577314334 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
7 Hb_009095_020 0.0626053436 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_003228_060 0.0635546147 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034168_060 0.0705613295 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
10 Hb_006272_010 0.0706194761 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
11 Hb_000696_200 0.0751633618 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
12 Hb_007645_040 0.0809267725 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
13 Hb_003477_020 0.0847533795 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
14 Hb_005171_020 0.0867498539 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
15 Hb_183479_030 0.0889112138 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
16 Hb_003952_030 0.0909514286 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
17 Hb_000185_020 0.0945513544 - - -
18 Hb_043327_010 0.0958548322 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
19 Hb_002997_060 0.0996929313 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
20 Hb_003947_020 0.0997779182 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]

Gene co-expression network

sample Hb_006331_010 Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_006331_010--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_006331_010--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_006331_010--Hb_083242_040 Hb_004138_020 Hb_004138_020 Hb_006331_010--Hb_004138_020 Hb_001715_050 Hb_001715_050 Hb_006331_010--Hb_001715_050 Hb_009095_020 Hb_009095_020 Hb_006331_010--Hb_009095_020 Hb_002600_110 Hb_002600_110 Hb_048694_010--Hb_002600_110 Hb_183479_030 Hb_183479_030 Hb_048694_010--Hb_183479_030 Hb_006272_010 Hb_006272_010 Hb_048694_010--Hb_006272_010 Hb_048694_010--Hb_001715_050 Hb_048694_010--Hb_083242_040 Hb_001081_070--Hb_004138_020 Hb_002294_020 Hb_002294_020 Hb_001081_070--Hb_002294_020 Hb_001081_070--Hb_083242_040 Hb_003477_020 Hb_003477_020 Hb_001081_070--Hb_003477_020 Hb_001081_070--Hb_009095_020 Hb_083242_040--Hb_001715_050 Hb_003228_060 Hb_003228_060 Hb_083242_040--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_083242_040--Hb_000696_200 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020 Hb_034168_060 Hb_034168_060 Hb_083242_040--Hb_034168_060 Hb_004138_020--Hb_003477_020 Hb_007645_040 Hb_007645_040 Hb_004138_020--Hb_007645_040 Hb_004138_020--Hb_034168_060 Hb_004138_020--Hb_083242_040 Hb_001715_050--Hb_003228_060 Hb_001715_050--Hb_006272_010 Hb_001715_050--Hb_000696_200 Hb_001715_050--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_001715_050--Hb_043327_010 Hb_009095_020--Hb_048694_010 Hb_009095_020--Hb_083242_040 Hb_026188_010 Hb_026188_010 Hb_009095_020--Hb_026188_010 Hb_009095_020--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0198034 0.200872 0.56882 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.40847

CAGE analysis