Hb_001081_070

Information

Type -
Description -
Location Contig1081: 90167-97769
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0003676
description hypothetical protein POPTR_0001s08730g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001081_070 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_004138_020 0.0506952423 - - PREDICTED: cucumisin-like [Populus euphratica]
3 Hb_006331_010 0.0521113777 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
4 Hb_002294_020 0.0682691333 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
5 Hb_083242_040 0.07465658 - - -
6 Hb_003477_020 0.0747293814 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
7 Hb_009095_020 0.0751567482 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_001715_050 0.0784101488 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
9 Hb_048694_010 0.0784998238 - - catalytic, putative [Ricinus communis]
10 Hb_003882_030 0.0850103372 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_004453_120 0.0854032836 - - ammonium transporter, putative [Ricinus communis]
12 Hb_002874_250 0.085542368 - - -
13 Hb_000010_230 0.085804586 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
14 Hb_157680_010 0.0858142714 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
15 Hb_158575_010 0.0859118146 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006272_010 0.0863163406 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
17 Hb_003228_060 0.0899784287 - - conserved hypothetical protein [Ricinus communis]
18 Hb_176140_010 0.0931232324 - - polyprotein [Oryza australiensis]
19 Hb_007645_040 0.0932512617 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
20 Hb_001779_050 0.0935083385 - - polyprotein [Ananas comosus]

Gene co-expression network

sample Hb_001081_070 Hb_001081_070 Hb_004138_020 Hb_004138_020 Hb_001081_070--Hb_004138_020 Hb_006331_010 Hb_006331_010 Hb_001081_070--Hb_006331_010 Hb_002294_020 Hb_002294_020 Hb_001081_070--Hb_002294_020 Hb_083242_040 Hb_083242_040 Hb_001081_070--Hb_083242_040 Hb_003477_020 Hb_003477_020 Hb_001081_070--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_001081_070--Hb_009095_020 Hb_004138_020--Hb_003477_020 Hb_007645_040 Hb_007645_040 Hb_004138_020--Hb_007645_040 Hb_004138_020--Hb_006331_010 Hb_034168_060 Hb_034168_060 Hb_004138_020--Hb_034168_060 Hb_004138_020--Hb_083242_040 Hb_048694_010 Hb_048694_010 Hb_006331_010--Hb_048694_010 Hb_006331_010--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_006331_010--Hb_001715_050 Hb_006331_010--Hb_009095_020 Hb_000043_060 Hb_000043_060 Hb_002294_020--Hb_000043_060 Hb_004113_030 Hb_004113_030 Hb_002294_020--Hb_004113_030 Hb_000758_060 Hb_000758_060 Hb_002294_020--Hb_000758_060 Hb_001681_010 Hb_001681_010 Hb_002294_020--Hb_001681_010 Hb_184398_010 Hb_184398_010 Hb_002294_020--Hb_184398_010 Hb_083242_040--Hb_001715_050 Hb_003228_060 Hb_003228_060 Hb_083242_040--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_083242_040--Hb_000696_200 Hb_006272_010 Hb_006272_010 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020 Hb_083242_040--Hb_034168_060 Hb_003477_020--Hb_007645_040 Hb_005087_020 Hb_005087_020 Hb_003477_020--Hb_005087_020 Hb_000031_070 Hb_000031_070 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_009095_020--Hb_048694_010 Hb_009095_020--Hb_083242_040 Hb_026188_010 Hb_026188_010 Hb_009095_020--Hb_026188_010 Hb_009095_020--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0201426 0.118929 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.27176

CAGE analysis