Hb_000031_070

Information

Type -
Description -
Location Contig31: 74405-75697
Sequence    

Annotation

kegg
ID rcu:RCOM_0918630
description Thioredoxin domain-containing protein, putative
nr
ID XP_002515339.1
description Thioredoxin domain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNM0
description Thioredoxin domain-containing protein, putative OS=Ricinus communis GN=RCOM_0918630 PE=4 SV=1
Gene Ontology
ID GO:0005516
description calmodulin-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_070 0.0 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
2 Hb_001338_010 0.0047701519 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
3 Hb_001779_050 0.0173204478 - - polyprotein [Ananas comosus]
4 Hb_176140_010 0.0182440468 - - polyprotein [Oryza australiensis]
5 Hb_158575_010 0.0426622226 - - conserved hypothetical protein [Ricinus communis]
6 Hb_157680_010 0.0432589273 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
7 Hb_004453_120 0.0461168546 - - ammonium transporter, putative [Ricinus communis]
8 Hb_151061_040 0.0532329709 - - putative retrotransposon protein [Phyllostachys edulis]
9 Hb_003477_020 0.0594632138 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
10 Hb_003882_030 0.0640835243 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_002874_250 0.0688171507 - - -
12 Hb_000010_230 0.0705630752 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
13 Hb_005087_020 0.0735147 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_004138_020 0.0837884738 - - PREDICTED: cucumisin-like [Populus euphratica]
15 Hb_125153_010 0.0885545491 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
16 Hb_054839_010 0.0947130199 - - PsbC, partial (chloroplast) [Asimina parviflora]
17 Hb_001081_070 0.1019728269 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_007645_040 0.1037739964 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
19 Hb_000388_020 0.1065953782 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
20 Hb_072695_010 0.1122892086 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000031_070 Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_000031_070--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_000031_070--Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_000031_070--Hb_176140_010 Hb_158575_010 Hb_158575_010 Hb_000031_070--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_000031_070--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_000031_070--Hb_004453_120 Hb_001338_010--Hb_001779_050 Hb_001338_010--Hb_176140_010 Hb_001338_010--Hb_158575_010 Hb_001338_010--Hb_157680_010 Hb_001338_010--Hb_004453_120 Hb_001779_050--Hb_176140_010 Hb_001779_050--Hb_158575_010 Hb_001779_050--Hb_157680_010 Hb_001779_050--Hb_004453_120 Hb_176140_010--Hb_158575_010 Hb_176140_010--Hb_157680_010 Hb_176140_010--Hb_004453_120 Hb_158575_010--Hb_157680_010 Hb_158575_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_158575_010--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_158575_010--Hb_002874_250 Hb_157680_010--Hb_004453_120 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_002874_250 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0132517 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.242741

CAGE analysis