Hb_157680_010

Information

Type -
Description -
Location Contig157680: 16-711
Sequence    

Annotation

kegg
ID mdm:103444007
description uncharacterized LOC103444007
nr
ID XP_008381139.1
description PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4SYA9
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003434mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC103444007

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157680_010 0.0 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
2 Hb_158575_010 0.0005993523 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004453_120 0.0028714911 - - ammonium transporter, putative [Ricinus communis]
4 Hb_003882_030 0.0209546873 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_176140_010 0.0250660414 - - polyprotein [Oryza australiensis]
6 Hb_002874_250 0.0257272678 - - -
7 Hb_001779_050 0.0259889882 - - polyprotein [Ananas comosus]
8 Hb_000010_230 0.0274883598 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
9 Hb_001338_010 0.0385102385 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_000031_070 0.0432589273 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
11 Hb_184398_010 0.0771840449 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_003477_020 0.0797909099 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
13 Hb_001681_010 0.0809375285 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
14 Hb_001081_070 0.0858142714 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_004138_020 0.0914742004 - - PREDICTED: cucumisin-like [Populus euphratica]
16 Hb_151061_040 0.0957699428 - - putative retrotransposon protein [Phyllostachys edulis]
17 Hb_004466_080 0.0997728686 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_005087_020 0.1047233372 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_025654_010 0.1135170864 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
20 Hb_011540_050 0.115013809 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_157680_010 Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_157680_010--Hb_158575_010 Hb_004453_120 Hb_004453_120 Hb_157680_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_157680_010--Hb_003882_030 Hb_176140_010 Hb_176140_010 Hb_157680_010--Hb_176140_010 Hb_002874_250 Hb_002874_250 Hb_157680_010--Hb_002874_250 Hb_001779_050 Hb_001779_050 Hb_157680_010--Hb_001779_050 Hb_158575_010--Hb_004453_120 Hb_158575_010--Hb_003882_030 Hb_158575_010--Hb_176140_010 Hb_158575_010--Hb_001779_050 Hb_158575_010--Hb_002874_250 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230 Hb_004453_120--Hb_176140_010 Hb_003882_030--Hb_002874_250 Hb_003882_030--Hb_000010_230 Hb_003882_030--Hb_176140_010 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070 Hb_002874_250--Hb_000010_230 Hb_002874_250--Hb_176140_010 Hb_001779_050--Hb_001338_010 Hb_001779_050--Hb_000031_070 Hb_001779_050--Hb_004453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0315612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.380126

CAGE analysis