Hb_003882_030

Information

Type -
Description -
Location Contig3882: 50884-57793
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID ADB85429.1
description putative retrotransposon protein [Phyllostachys edulis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID D3IVT9
description Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1
Gene Ontology
ID GO:0003677
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003882_030 0.0 - - putative retrotransposon protein [Phyllostachys edulis]
2 Hb_002874_250 0.0047773227 - - -
3 Hb_000010_230 0.0065405758 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
4 Hb_004453_120 0.0180853317 - - ammonium transporter, putative [Ricinus communis]
5 Hb_157680_010 0.0209546873 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
6 Hb_158575_010 0.0215535032 - - conserved hypothetical protein [Ricinus communis]
7 Hb_176140_010 0.0459694301 - - polyprotein [Oryza australiensis]
8 Hb_001779_050 0.0468892795 - - polyprotein [Ananas comosus]
9 Hb_184398_010 0.0563754802 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_001338_010 0.0593591259 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
11 Hb_001681_010 0.0601447075 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
12 Hb_000031_070 0.0640835243 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
13 Hb_004466_080 0.0790679381 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
14 Hb_001081_070 0.0850103372 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_025654_010 0.092884657 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_011540_050 0.0943896573 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_187301_010 0.0946825592 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
18 Hb_003477_020 0.0951259895 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
19 Hb_000088_280 0.0981258832 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
20 Hb_004138_020 0.1017040926 - - PREDICTED: cucumisin-like [Populus euphratica]

Gene co-expression network

sample Hb_003882_030 Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_003882_030--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_003882_030--Hb_000010_230 Hb_004453_120 Hb_004453_120 Hb_003882_030--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_003882_030--Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_003882_030--Hb_158575_010 Hb_176140_010 Hb_176140_010 Hb_003882_030--Hb_176140_010 Hb_002874_250--Hb_000010_230 Hb_002874_250--Hb_004453_120 Hb_002874_250--Hb_157680_010 Hb_002874_250--Hb_158575_010 Hb_002874_250--Hb_176140_010 Hb_000010_230--Hb_004453_120 Hb_000010_230--Hb_157680_010 Hb_000010_230--Hb_158575_010 Hb_184398_010 Hb_184398_010 Hb_000010_230--Hb_184398_010 Hb_004453_120--Hb_157680_010 Hb_004453_120--Hb_158575_010 Hb_004453_120--Hb_176140_010 Hb_157680_010--Hb_158575_010 Hb_157680_010--Hb_176140_010 Hb_001779_050 Hb_001779_050 Hb_157680_010--Hb_001779_050 Hb_158575_010--Hb_176140_010 Hb_158575_010--Hb_001779_050 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00579592 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0583854

CAGE analysis