Hb_001338_010

Information

Type transcription factor
Description TF Family: GNAT
Location Contig1338: 22996-24268
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07820g
description POPTRDRAFT_804381; GCN5-related N-acetyltransferase family protein
nr
ID XP_002313243.1
description GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
swissprot
ID O64815
description Probable N-acetyltransferase HLS1-like OS=Arabidopsis thaliana GN=At2g23060 PE=2 SV=1
trembl
ID B9HNC9
description GCN5-related N-acetyltransferase family protein OS=Populus trichocarpa GN=POPTR_0009s07820g PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable n-acetyltransferase hls1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_010 0.0 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
2 Hb_000031_070 0.0047701519 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
3 Hb_001779_050 0.0125533542 - - polyprotein [Ananas comosus]
4 Hb_176140_010 0.0134773425 - - polyprotein [Oryza australiensis]
5 Hb_158575_010 0.0379129509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_157680_010 0.0385102385 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
7 Hb_004453_120 0.0413710505 - - ammonium transporter, putative [Ricinus communis]
8 Hb_151061_040 0.0579473784 - - putative retrotransposon protein [Phyllostachys edulis]
9 Hb_003882_030 0.0593591259 - - putative retrotransposon protein [Phyllostachys edulis]
10 Hb_003477_020 0.0605469688 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
11 Hb_002874_250 0.0640992444 - - -
12 Hb_000010_230 0.0658476449 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
13 Hb_005087_020 0.0764287748 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_004138_020 0.0835857224 - - PREDICTED: cucumisin-like [Populus euphratica]
15 Hb_125153_010 0.0931544875 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
16 Hb_054839_010 0.0984427817 - - PsbC, partial (chloroplast) [Asimina parviflora]
17 Hb_001081_070 0.0994229046 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_007645_040 0.105436488 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
19 Hb_000388_020 0.1099356728 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
20 Hb_184398_010 0.1150539659 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]

Gene co-expression network

sample Hb_001338_010 Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_001338_010--Hb_000031_070 Hb_001779_050 Hb_001779_050 Hb_001338_010--Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_001338_010--Hb_176140_010 Hb_158575_010 Hb_158575_010 Hb_001338_010--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_001338_010--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_001338_010--Hb_004453_120 Hb_000031_070--Hb_001779_050 Hb_000031_070--Hb_176140_010 Hb_000031_070--Hb_158575_010 Hb_000031_070--Hb_157680_010 Hb_000031_070--Hb_004453_120 Hb_001779_050--Hb_176140_010 Hb_001779_050--Hb_158575_010 Hb_001779_050--Hb_157680_010 Hb_001779_050--Hb_004453_120 Hb_176140_010--Hb_158575_010 Hb_176140_010--Hb_157680_010 Hb_176140_010--Hb_004453_120 Hb_158575_010--Hb_157680_010 Hb_158575_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_158575_010--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_158575_010--Hb_002874_250 Hb_157680_010--Hb_004453_120 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_002874_250 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0594036 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.03493

CAGE analysis