Hb_002874_250

Information

Type -
Description -
Location Contig2874: 191919-193275
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_250 0.0 - - -
2 Hb_000010_230 0.0017633473 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
3 Hb_003882_030 0.0047773227 - - putative retrotransposon protein [Phyllostachys edulis]
4 Hb_004453_120 0.022859046 - - ammonium transporter, putative [Ricinus communis]
5 Hb_157680_010 0.0257272678 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
6 Hb_158575_010 0.0263258265 - - conserved hypothetical protein [Ricinus communis]
7 Hb_176140_010 0.0507247862 - - polyprotein [Oryza australiensis]
8 Hb_184398_010 0.0516190487 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_001779_050 0.051643732 - - polyprotein [Ananas comosus]
10 Hb_001681_010 0.0553910738 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
11 Hb_001338_010 0.0640992444 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
12 Hb_000031_070 0.0688171507 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
13 Hb_004466_080 0.0743304665 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
14 Hb_001081_070 0.085542368 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_025654_010 0.0881609947 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_011540_050 0.0896675917 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_187301_010 0.0899608064 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
18 Hb_000088_280 0.0934078558 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_003370_040 0.0977458479 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_003477_020 0.0988838281 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]

Gene co-expression network

sample Hb_002874_250 Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_002874_250--Hb_000010_230 Hb_003882_030 Hb_003882_030 Hb_002874_250--Hb_003882_030 Hb_004453_120 Hb_004453_120 Hb_002874_250--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_002874_250--Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_002874_250--Hb_158575_010 Hb_176140_010 Hb_176140_010 Hb_002874_250--Hb_176140_010 Hb_000010_230--Hb_003882_030 Hb_000010_230--Hb_004453_120 Hb_000010_230--Hb_157680_010 Hb_000010_230--Hb_158575_010 Hb_184398_010 Hb_184398_010 Hb_000010_230--Hb_184398_010 Hb_003882_030--Hb_004453_120 Hb_003882_030--Hb_157680_010 Hb_003882_030--Hb_158575_010 Hb_003882_030--Hb_176140_010 Hb_004453_120--Hb_157680_010 Hb_004453_120--Hb_158575_010 Hb_004453_120--Hb_176140_010 Hb_157680_010--Hb_158575_010 Hb_157680_010--Hb_176140_010 Hb_001779_050 Hb_001779_050 Hb_157680_010--Hb_001779_050 Hb_158575_010--Hb_176140_010 Hb_158575_010--Hb_001779_050 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0143133 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.138679

CAGE analysis