Hb_184398_010

Information

Type -
Description -
Location Contig184398: 1813-3865
Sequence    

Annotation

kegg
ID cit:102627523
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006492639.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID O82276
description Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184398_010 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_001681_010 0.0037860913 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
3 Hb_004466_080 0.0228202493 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
4 Hb_025654_010 0.0367432406 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
5 Hb_011540_050 0.038260998 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_187301_010 0.0385564085 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
7 Hb_000088_280 0.0420298491 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
8 Hb_003370_040 0.0464025317 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_001192_020 0.0481078697 - - -
10 Hb_000010_230 0.0498624125 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
11 Hb_002874_250 0.0516190487 - - -
12 Hb_003882_030 0.0563754802 - - putative retrotransposon protein [Phyllostachys edulis]
13 Hb_020956_050 0.0592363865 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
14 Hb_008021_030 0.0622268205 - - short-chain dehydrogenase, putative [Ricinus communis]
15 Hb_001140_310 0.0631830766 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
16 Hb_004528_030 0.0631873237 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_135174_010 0.0632118947 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
18 Hb_003653_040 0.0677802809 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
19 Hb_001148_010 0.0709229175 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_004453_120 0.0743402198 - - ammonium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_184398_010 Hb_184398_010 Hb_001681_010 Hb_001681_010 Hb_184398_010--Hb_001681_010 Hb_004466_080 Hb_004466_080 Hb_184398_010--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_184398_010--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_184398_010--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_184398_010--Hb_187301_010 Hb_000088_280 Hb_000088_280 Hb_184398_010--Hb_000088_280 Hb_001681_010--Hb_004466_080 Hb_001681_010--Hb_025654_010 Hb_001681_010--Hb_011540_050 Hb_001681_010--Hb_187301_010 Hb_001681_010--Hb_000088_280 Hb_004466_080--Hb_025654_010 Hb_004466_080--Hb_011540_050 Hb_004466_080--Hb_187301_010 Hb_004466_080--Hb_000088_280 Hb_025654_010--Hb_011540_050 Hb_025654_010--Hb_187301_010 Hb_025654_010--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_025654_010--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_025654_010--Hb_001192_020 Hb_011540_050--Hb_187301_010 Hb_011540_050--Hb_000088_280 Hb_011540_050--Hb_003370_040 Hb_011540_050--Hb_001192_020 Hb_187301_010--Hb_000088_280 Hb_187301_010--Hb_003370_040 Hb_187301_010--Hb_001192_020 Hb_000088_280--Hb_003370_040 Hb_000088_280--Hb_001192_020 Hb_020956_050 Hb_020956_050 Hb_000088_280--Hb_020956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0708088 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.465962

CAGE analysis