Hb_025654_010

Information

Type -
Description -
Location Contig25654: 130-4155
Sequence    

Annotation

kegg
ID pda:103713573
description uncharacterized LOC103713573
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q2QRU8
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g26340 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025654_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_011540_050 0.0015198813 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_187301_010 0.0018157233 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
4 Hb_000088_280 0.0052946735 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_003370_040 0.0096754172 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_001192_020 0.0113842323 - - -
7 Hb_004466_080 0.0139349833 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
8 Hb_020956_050 0.0225398679 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
9 Hb_008021_030 0.0255388557 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_001140_310 0.0264979568 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
11 Hb_004528_030 0.0265022166 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_135174_010 0.0265268614 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
13 Hb_003653_040 0.0311095668 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
14 Hb_001681_010 0.0329620474 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
15 Hb_001148_010 0.0342627328 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_184398_010 0.0367432406 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_003060_130 0.050008684 - - PREDICTED: protein P21-like [Jatropha curcas]
18 Hb_000202_110 0.050489943 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
19 Hb_020332_020 0.0660985065 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
20 Hb_000152_400 0.0683583357 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]

Gene co-expression network

sample Hb_025654_010 Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_025654_010--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_025654_010--Hb_187301_010 Hb_000088_280 Hb_000088_280 Hb_025654_010--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_025654_010--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_025654_010--Hb_001192_020 Hb_004466_080 Hb_004466_080 Hb_025654_010--Hb_004466_080 Hb_011540_050--Hb_187301_010 Hb_011540_050--Hb_000088_280 Hb_011540_050--Hb_003370_040 Hb_011540_050--Hb_001192_020 Hb_011540_050--Hb_004466_080 Hb_187301_010--Hb_000088_280 Hb_187301_010--Hb_003370_040 Hb_187301_010--Hb_001192_020 Hb_187301_010--Hb_004466_080 Hb_000088_280--Hb_003370_040 Hb_000088_280--Hb_001192_020 Hb_020956_050 Hb_020956_050 Hb_000088_280--Hb_020956_050 Hb_003370_040--Hb_001192_020 Hb_003370_040--Hb_020956_050 Hb_001192_020--Hb_020956_050 Hb_001681_010 Hb_001681_010 Hb_004466_080--Hb_001681_010 Hb_004466_080--Hb_000088_280 Hb_184398_010 Hb_184398_010 Hb_004466_080--Hb_184398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0041275 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0212645

CAGE analysis