Hb_011540_050

Information

Type -
Description -
Location Contig11540: 29259-32681
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011540_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_187301_010 0.0002958428 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
3 Hb_025654_010 0.0015198813 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
4 Hb_000088_280 0.00377482 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_003370_040 0.0081556446 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_001192_020 0.0098645052 - - -
7 Hb_004466_080 0.0154545538 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
8 Hb_020956_050 0.0210206231 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
9 Hb_008021_030 0.0240197938 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_001140_310 0.0249789579 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
11 Hb_004528_030 0.0249832181 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_135174_010 0.0250078645 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
13 Hb_003653_040 0.029590902 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
14 Hb_001148_010 0.0327443251 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_001681_010 0.0344802247 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
16 Hb_184398_010 0.038260998 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_003060_130 0.0484918941 - - PREDICTED: protein P21-like [Jatropha curcas]
18 Hb_000202_110 0.0489732109 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
19 Hb_020332_020 0.0645839055 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
20 Hb_000152_400 0.0668440827 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]

Gene co-expression network

sample Hb_011540_050 Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_011540_050--Hb_187301_010 Hb_025654_010 Hb_025654_010 Hb_011540_050--Hb_025654_010 Hb_000088_280 Hb_000088_280 Hb_011540_050--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_011540_050--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_011540_050--Hb_001192_020 Hb_004466_080 Hb_004466_080 Hb_011540_050--Hb_004466_080 Hb_187301_010--Hb_025654_010 Hb_187301_010--Hb_000088_280 Hb_187301_010--Hb_003370_040 Hb_187301_010--Hb_001192_020 Hb_187301_010--Hb_004466_080 Hb_025654_010--Hb_000088_280 Hb_025654_010--Hb_003370_040 Hb_025654_010--Hb_001192_020 Hb_025654_010--Hb_004466_080 Hb_000088_280--Hb_003370_040 Hb_000088_280--Hb_001192_020 Hb_020956_050 Hb_020956_050 Hb_000088_280--Hb_020956_050 Hb_003370_040--Hb_001192_020 Hb_003370_040--Hb_020956_050 Hb_001192_020--Hb_020956_050 Hb_001681_010 Hb_001681_010 Hb_004466_080--Hb_001681_010 Hb_004466_080--Hb_000088_280 Hb_184398_010 Hb_184398_010 Hb_004466_080--Hb_184398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00483794 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0246844

CAGE analysis