Hb_020956_050

Information

Type -
Description -
Location Contig20956: 50842-56496
Sequence    

Annotation

kegg
ID gmx:102670328
description uncharacterized LOC102670328
nr
ID XP_006599860.1
description PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A067DB76
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042094mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020956_050 0.0 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
2 Hb_008021_030 0.0030004463 - - short-chain dehydrogenase, putative [Ricinus communis]
3 Hb_001140_310 0.0039600825 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
4 Hb_004528_030 0.0039643448 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_135174_010 0.0039890038 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
6 Hb_003653_040 0.0085747233 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
7 Hb_001192_020 0.011158119 - - -
8 Hb_001148_010 0.0117303905 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_003370_040 0.0128668925 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_000088_280 0.0172470005 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_187301_010 0.0207248939 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
12 Hb_011540_050 0.0210206231 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_025654_010 0.0225398679 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
14 Hb_003060_130 0.0274938194 - - PREDICTED: protein P21-like [Jatropha curcas]
15 Hb_000202_110 0.0279757388 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
16 Hb_004466_080 0.0364644209 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
17 Hb_020332_020 0.0436095373 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_000152_400 0.045873613 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_001681_010 0.0554629636 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
20 Hb_032050_030 0.0555560678 - - C, putative [Ricinus communis]

Gene co-expression network

sample Hb_020956_050 Hb_020956_050 Hb_008021_030 Hb_008021_030 Hb_020956_050--Hb_008021_030 Hb_001140_310 Hb_001140_310 Hb_020956_050--Hb_001140_310 Hb_004528_030 Hb_004528_030 Hb_020956_050--Hb_004528_030 Hb_135174_010 Hb_135174_010 Hb_020956_050--Hb_135174_010 Hb_003653_040 Hb_003653_040 Hb_020956_050--Hb_003653_040 Hb_001192_020 Hb_001192_020 Hb_020956_050--Hb_001192_020 Hb_008021_030--Hb_001140_310 Hb_008021_030--Hb_004528_030 Hb_008021_030--Hb_135174_010 Hb_008021_030--Hb_003653_040 Hb_001148_010 Hb_001148_010 Hb_008021_030--Hb_001148_010 Hb_001140_310--Hb_004528_030 Hb_001140_310--Hb_135174_010 Hb_001140_310--Hb_003653_040 Hb_001140_310--Hb_001148_010 Hb_004528_030--Hb_135174_010 Hb_004528_030--Hb_003653_040 Hb_004528_030--Hb_001148_010 Hb_135174_010--Hb_003653_040 Hb_135174_010--Hb_001148_010 Hb_003653_040--Hb_001148_010 Hb_003370_040 Hb_003370_040 Hb_001192_020--Hb_003370_040 Hb_000088_280 Hb_000088_280 Hb_001192_020--Hb_000088_280 Hb_187301_010 Hb_187301_010 Hb_001192_020--Hb_187301_010 Hb_011540_050 Hb_011540_050 Hb_001192_020--Hb_011540_050 Hb_025654_010 Hb_025654_010 Hb_001192_020--Hb_025654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0151429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0677849

CAGE analysis