Hb_135174_010

Information

Type -
Description -
Location Contig135174: 103-528
Sequence    

Annotation

kegg
ID tcc:TCM_000802
description Glycosyl hydrolase family protein 43 isoform 1
nr
ID XP_007047540.1
description Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DHP7
description Glycosyl hydrolase family protein 43 isoform 2 OS=Theobroma cacao GN=TCM_000802 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glycosyl hydrolase family protein 43 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135174_010 0.0 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
2 Hb_004528_030 2.46593e-05 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_001140_310 2.89217e-05 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
4 Hb_008021_030 0.000988567 - - short-chain dehydrogenase, putative [Ricinus communis]
5 Hb_020956_050 0.0039890038 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
6 Hb_003653_040 0.0045858444 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
7 Hb_001148_010 0.0077416733 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_001192_020 0.0151465665 - - -
9 Hb_003370_040 0.0168551801 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_000088_280 0.021234785 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_003060_130 0.0235067988 - - PREDICTED: protein P21-like [Jatropha curcas]
12 Hb_000202_110 0.0239887925 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
13 Hb_187301_010 0.0247121816 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
14 Hb_011540_050 0.0250078645 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_025654_010 0.0265268614 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_020332_020 0.0396256868 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_004466_080 0.0404483346 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_000152_400 0.0418903171 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_032050_030 0.0515754322 - - C, putative [Ricinus communis]
20 Hb_001681_010 0.0594401711 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_135174_010 Hb_135174_010 Hb_004528_030 Hb_004528_030 Hb_135174_010--Hb_004528_030 Hb_001140_310 Hb_001140_310 Hb_135174_010--Hb_001140_310 Hb_008021_030 Hb_008021_030 Hb_135174_010--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_135174_010--Hb_020956_050 Hb_003653_040 Hb_003653_040 Hb_135174_010--Hb_003653_040 Hb_001148_010 Hb_001148_010 Hb_135174_010--Hb_001148_010 Hb_004528_030--Hb_001140_310 Hb_004528_030--Hb_008021_030 Hb_004528_030--Hb_020956_050 Hb_004528_030--Hb_003653_040 Hb_004528_030--Hb_001148_010 Hb_001140_310--Hb_008021_030 Hb_001140_310--Hb_020956_050 Hb_001140_310--Hb_003653_040 Hb_001140_310--Hb_001148_010 Hb_008021_030--Hb_020956_050 Hb_008021_030--Hb_003653_040 Hb_008021_030--Hb_001148_010 Hb_020956_050--Hb_003653_040 Hb_001192_020 Hb_001192_020 Hb_020956_050--Hb_001192_020 Hb_003653_040--Hb_001148_010 Hb_001148_010--Hb_020956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.228367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.997788

CAGE analysis