Hb_003653_040

Information

Type -
Description -
Location Contig3653: 49883-53127
Sequence    

Annotation

kegg
ID sbi:SORBI_05g024215
description SORBIDRAFT_05g024215, Sb05g024215; hypothetical protein
nr
ID XP_002451109.1
description hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID A0A0A9VCQ3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003653_040 0.0 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
2 Hb_001148_010 0.0031559163 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_135174_010 0.0045858444 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
4 Hb_004528_030 0.0046105033 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_001140_310 0.0046147655 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
6 Hb_008021_030 0.0055743914 - - short-chain dehydrogenase, putative [Ricinus communis]
7 Hb_020956_050 0.0085747233 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
8 Hb_003060_130 0.0189224999 - - PREDICTED: protein P21-like [Jatropha curcas]
9 Hb_000202_110 0.0194045642 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
10 Hb_001192_020 0.0197312976 - - -
11 Hb_003370_040 0.0214396742 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
12 Hb_000088_280 0.0258185643 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
13 Hb_187301_010 0.0292952815 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
14 Hb_011540_050 0.029590902 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_025654_010 0.0311095668 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_020332_020 0.035044533 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_000152_400 0.0373097311 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
18 Hb_004466_080 0.0450270698 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
19 Hb_032050_030 0.0469976075 - - C, putative [Ricinus communis]
20 Hb_030370_080 0.0618376521 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]

Gene co-expression network

sample Hb_003653_040 Hb_003653_040 Hb_001148_010 Hb_001148_010 Hb_003653_040--Hb_001148_010 Hb_135174_010 Hb_135174_010 Hb_003653_040--Hb_135174_010 Hb_004528_030 Hb_004528_030 Hb_003653_040--Hb_004528_030 Hb_001140_310 Hb_001140_310 Hb_003653_040--Hb_001140_310 Hb_008021_030 Hb_008021_030 Hb_003653_040--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_003653_040--Hb_020956_050 Hb_001148_010--Hb_135174_010 Hb_001148_010--Hb_004528_030 Hb_001148_010--Hb_001140_310 Hb_001148_010--Hb_008021_030 Hb_001148_010--Hb_020956_050 Hb_135174_010--Hb_004528_030 Hb_135174_010--Hb_001140_310 Hb_135174_010--Hb_008021_030 Hb_135174_010--Hb_020956_050 Hb_004528_030--Hb_001140_310 Hb_004528_030--Hb_008021_030 Hb_004528_030--Hb_020956_050 Hb_001140_310--Hb_008021_030 Hb_001140_310--Hb_020956_050 Hb_008021_030--Hb_020956_050 Hb_001192_020 Hb_001192_020 Hb_020956_050--Hb_001192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0259778 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.110411

CAGE analysis