Hb_001140_310

Information

Type -
Description -
Location Contig1140: 283520-283988
Sequence    

Annotation

kegg
ID atr:s00025p00025050
description AMTR_s00025p00025050; hypothetical protein
nr
ID ERN12294.1
description hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID W1PWN1
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00025050 PE=4 SV=1
Gene Ontology
ID GO:0005874
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_310 0.0 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
2 Hb_004528_030 4.2623e-06 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_135174_010 2.89217e-05 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
4 Hb_008021_030 0.0009596454 - - short-chain dehydrogenase, putative [Ricinus communis]
5 Hb_020956_050 0.0039600825 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
6 Hb_003653_040 0.0046147655 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
7 Hb_001148_010 0.0077705937 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_001192_020 0.0151176502 - - -
9 Hb_003370_040 0.0168262652 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_000088_280 0.0212058742 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_003060_130 0.0235357082 - - PREDICTED: protein P21-like [Jatropha curcas]
12 Hb_000202_110 0.0240177014 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
13 Hb_187301_010 0.0246832746 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
14 Hb_011540_050 0.0249789579 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_025654_010 0.0264979568 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_020332_020 0.0396545748 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_004466_080 0.0404194535 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_000152_400 0.0419192013 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_032050_030 0.0516042979 - - C, putative [Ricinus communis]
20 Hb_001681_010 0.0594113404 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001140_310 Hb_001140_310 Hb_004528_030 Hb_004528_030 Hb_001140_310--Hb_004528_030 Hb_135174_010 Hb_135174_010 Hb_001140_310--Hb_135174_010 Hb_008021_030 Hb_008021_030 Hb_001140_310--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_001140_310--Hb_020956_050 Hb_003653_040 Hb_003653_040 Hb_001140_310--Hb_003653_040 Hb_001148_010 Hb_001148_010 Hb_001140_310--Hb_001148_010 Hb_004528_030--Hb_135174_010 Hb_004528_030--Hb_008021_030 Hb_004528_030--Hb_020956_050 Hb_004528_030--Hb_003653_040 Hb_004528_030--Hb_001148_010 Hb_135174_010--Hb_008021_030 Hb_135174_010--Hb_020956_050 Hb_135174_010--Hb_003653_040 Hb_135174_010--Hb_001148_010 Hb_008021_030--Hb_020956_050 Hb_008021_030--Hb_003653_040 Hb_008021_030--Hb_001148_010 Hb_020956_050--Hb_003653_040 Hb_001192_020 Hb_001192_020 Hb_020956_050--Hb_001192_020 Hb_003653_040--Hb_001148_010 Hb_001148_010--Hb_020956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.122045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.533336

CAGE analysis