Hb_034168_060

Information

Type -
Description -
Location Contig34168: 53515-54794
Sequence    

Annotation

kegg
ID cmo:103504353
description ribulose bisphosphate carboxylase large chain
nr
ID ADK92711.1
description ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
swissprot
ID P28394
description Ribulose bisphosphate carboxylase large chain (Fragment) OS=Coriaria myrtifolia GN=rbcL PE=3 SV=1
trembl
ID E0AD35
description Ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Cucumis argenteus PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribulose- -bisphosphate carboxylase oxygenase large partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034168_060 0.0 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
2 Hb_000696_200 0.0427291924 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
3 Hb_003228_060 0.0452173873 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083242_040 0.0496253005 - - -
5 Hb_001715_050 0.0569721178 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
6 Hb_007645_040 0.0654470727 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
7 Hb_006331_010 0.0705613295 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_002997_060 0.0748215885 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
9 Hb_004138_020 0.0758352386 - - PREDICTED: cucumisin-like [Populus euphratica]
10 Hb_006272_010 0.0759013725 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
11 Hb_003407_050 0.0791873635 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_009095_020 0.0802026818 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_005171_020 0.0845214755 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
14 Hb_007595_030 0.0874872255 - - psbA gene product (chloroplast) [Silene noctiflora]
15 Hb_003947_020 0.089560305 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
16 Hb_005018_050 0.0908655631 - - PREDICTED: licodione synthase-like [Jatropha curcas]
17 Hb_015981_010 0.0910562968 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_043327_010 0.0912022006 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
19 Hb_088080_010 0.0920813793 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
20 Hb_007044_030 0.0921432356 - - Os06g0273400 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_034168_060 Hb_034168_060 Hb_000696_200 Hb_000696_200 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_083242_040 Hb_083242_040 Hb_034168_060--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_034168_060--Hb_001715_050 Hb_007645_040 Hb_007645_040 Hb_034168_060--Hb_007645_040 Hb_006331_010 Hb_006331_010 Hb_034168_060--Hb_006331_010 Hb_000696_200--Hb_003228_060 Hb_000696_200--Hb_083242_040 Hb_000696_200--Hb_001715_050 Hb_002997_060 Hb_002997_060 Hb_000696_200--Hb_002997_060 Hb_006272_010 Hb_006272_010 Hb_000696_200--Hb_006272_010 Hb_003228_060--Hb_083242_040 Hb_003228_060--Hb_001715_050 Hb_003228_060--Hb_006272_010 Hb_003228_060--Hb_002997_060 Hb_083242_040--Hb_001715_050 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020 Hb_001715_050--Hb_006272_010 Hb_001715_050--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_001715_050--Hb_043327_010 Hb_004138_020 Hb_004138_020 Hb_007645_040--Hb_004138_020 Hb_003477_020 Hb_003477_020 Hb_007645_040--Hb_003477_020 Hb_000388_020 Hb_000388_020 Hb_007645_040--Hb_000388_020 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_054839_010 Hb_054839_010 Hb_007645_040--Hb_054839_010 Hb_048694_010 Hb_048694_010 Hb_006331_010--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_006331_010--Hb_001081_070 Hb_006331_010--Hb_083242_040 Hb_006331_010--Hb_004138_020 Hb_006331_010--Hb_001715_050 Hb_009095_020 Hb_009095_020 Hb_006331_010--Hb_009095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0442815 0 1.52585 1.90169 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0518627 36.1676

CAGE analysis