Hb_054839_010

Information

Type -
Description -
Location Contig54839: 198-812
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00030
description psbC; photosystem II 44 kDa protein
nr
ID ACZ26007.1
description PsbC, partial (chloroplast) [Asimina parviflora]
swissprot
ID A6MMU0
description Photosystem II CP43 reaction center protein OS=Illicium oligandrum GN=psbC PE=3 SV=1
trembl
ID D7NHQ8
description Photosystem II CP43 reaction center protein (Fragment) OS=Asimina parviflora GN=psbC PE=3 SV=1
Gene Ontology
ID GO:0009521
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054839_010 0.0 - - PsbC, partial (chloroplast) [Asimina parviflora]
2 Hb_000388_020 0.0444109638 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
3 Hb_125153_010 0.0590829242 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
4 Hb_005087_020 0.0606445867 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
5 Hb_151061_040 0.0617719286 - - putative retrotransposon protein [Phyllostachys edulis]
6 Hb_006302_050 0.0624318434 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
7 Hb_104509_010 0.0684058556 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
8 Hb_003477_020 0.0705987195 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
9 Hb_106850_010 0.0730621423 - - photosystem II protein D2 [Lactuca sativa]
10 Hb_072695_010 0.0745259209 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_005914_030 0.074737026 - - -
12 Hb_007645_040 0.0757308246 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
13 Hb_126973_010 0.0786707282 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
14 Hb_000959_380 0.0802601077 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
15 Hb_007645_020 0.0857893671 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
16 Hb_005224_020 0.0861983664 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_103255_010 0.0870266212 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_154980_010 0.0882945218 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
19 Hb_131816_010 0.088749377 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_001790_110 0.0892446177 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_054839_010 Hb_054839_010 Hb_000388_020 Hb_000388_020 Hb_054839_010--Hb_000388_020 Hb_125153_010 Hb_125153_010 Hb_054839_010--Hb_125153_010 Hb_005087_020 Hb_005087_020 Hb_054839_010--Hb_005087_020 Hb_151061_040 Hb_151061_040 Hb_054839_010--Hb_151061_040 Hb_006302_050 Hb_006302_050 Hb_054839_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_054839_010--Hb_104509_010 Hb_000388_020--Hb_006302_050 Hb_007645_040 Hb_007645_040 Hb_000388_020--Hb_007645_040 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_125153_010--Hb_151061_040 Hb_072695_010 Hb_072695_010 Hb_125153_010--Hb_072695_010 Hb_125153_010--Hb_005087_020 Hb_125153_010--Hb_000388_020 Hb_005914_030 Hb_005914_030 Hb_125153_010--Hb_005914_030 Hb_003477_020 Hb_003477_020 Hb_005087_020--Hb_003477_020 Hb_005087_020--Hb_151061_040 Hb_005087_020--Hb_000388_020 Hb_000031_070 Hb_000031_070 Hb_005087_020--Hb_000031_070 Hb_151061_040--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_151061_040--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_151061_040--Hb_001779_050 Hb_006302_050--Hb_104509_010 Hb_006302_050--Hb_106850_010 Hb_006302_050--Hb_005914_030 Hb_003144_020 Hb_003144_020 Hb_006302_050--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.59466 2.27771 0 0.1829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 114.908

CAGE analysis