Hb_106850_010

Information

Type -
Description -
Location Contig106850: 313-1508
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00029
description psbD; photosystem II protein D2
nr
ID BAE47589.1
description photosystem II protein D2 [Lactuca sativa]
swissprot
ID Q14FG2
description Photosystem II D2 protein OS=Populus alba GN=psbD PE=3 SV=1
trembl
ID A0A0D3BE55
description Uncharacterized protein OS=Brassica oleracea var. oleracea GN=PSBD PE=4 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii protein d2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02102: 963-1133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106850_010 0.0 - - photosystem II protein D2 [Lactuca sativa]
2 Hb_154980_010 0.0240145547 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
3 Hb_002835_420 0.0318455483 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
4 Hb_104509_010 0.0333554411 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
5 Hb_006302_050 0.0375867388 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
6 Hb_126973_010 0.0492473347 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
7 Hb_003144_020 0.0569273383 - - (R)-limonene synthase, putative [Ricinus communis]
8 Hb_000388_020 0.060963994 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
9 Hb_131816_010 0.0618867868 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_031194_030 0.0641803423 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
11 Hb_005914_030 0.0683841118 - - -
12 Hb_003963_030 0.0692898488 - - psbB [Jatropha curcas]
13 Hb_000959_380 0.0707383949 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
14 Hb_005224_020 0.0717555958 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
15 Hb_003407_050 0.0725915948 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_005018_050 0.0729157781 - - PREDICTED: licodione synthase-like [Jatropha curcas]
17 Hb_054839_010 0.0730621423 - - PsbC, partial (chloroplast) [Asimina parviflora]
18 Hb_000326_100 0.0732593647 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
19 Hb_003688_030 0.0737801622 - - NADH dehydrogenase 2-like ORF 180
20 Hb_007645_050 0.0740736739 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_106850_010 Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_106850_010--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_106850_010--Hb_002835_420 Hb_104509_010 Hb_104509_010 Hb_106850_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_106850_010--Hb_006302_050 Hb_126973_010 Hb_126973_010 Hb_106850_010--Hb_126973_010 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020 Hb_154980_010--Hb_002835_420 Hb_154980_010--Hb_104509_010 Hb_154980_010--Hb_006302_050 Hb_154980_010--Hb_126973_010 Hb_031194_030 Hb_031194_030 Hb_154980_010--Hb_031194_030 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_002835_420--Hb_126973_010 Hb_002835_420--Hb_006302_050 Hb_104509_010--Hb_006302_050 Hb_104509_010--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_003144_020 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_005018_050 Hb_005018_050 Hb_126973_010--Hb_005018_050 Hb_126973_010--Hb_006302_050 Hb_126973_010--Hb_104509_010 Hb_003144_020--Hb_000959_380 Hb_003144_020--Hb_005224_020 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_003144_020--Hb_005914_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0656721 0.340143 5.74162 3.18761 0.156868 0.148736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0462416 0 0.201773 0.0292033 315.514

CAGE analysis