Hb_006302_050

Information

Type -
Description -
Location Contig6302: 62016-67657
Sequence    

Annotation

kegg
ID pda:103699371
description uncharacterized LOC103699371
nr
ID XP_010527658.1
description PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID E7BQD6
description Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006302_050 0.0 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
2 Hb_104509_010 0.0164406443 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
3 Hb_106850_010 0.0375867388 - - photosystem II protein D2 [Lactuca sativa]
4 Hb_005914_030 0.0421015285 - - -
5 Hb_003144_020 0.0432435813 - - (R)-limonene synthase, putative [Ricinus communis]
6 Hb_131816_010 0.0447963887 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_000959_380 0.0476718564 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
8 Hb_005224_020 0.0477836117 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_154980_010 0.0513709396 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
10 Hb_000388_020 0.0521933058 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
11 Hb_002835_420 0.0524541577 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
12 Hb_126973_010 0.0602049511 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
13 Hb_054839_010 0.0624318434 - - PsbC, partial (chloroplast) [Asimina parviflora]
14 Hb_000326_100 0.0694699983 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
15 Hb_005622_090 0.0729244662 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
16 Hb_002395_010 0.0737980931 - - -
17 Hb_012184_020 0.0756940969 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010172_020 0.0780146797 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
19 Hb_103255_010 0.0805413409 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_007645_020 0.0814855453 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

Gene co-expression network

sample Hb_006302_050 Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_006302_050--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_006302_050--Hb_106850_010 Hb_005914_030 Hb_005914_030 Hb_006302_050--Hb_005914_030 Hb_003144_020 Hb_003144_020 Hb_006302_050--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_154980_010 Hb_154980_010 Hb_106850_010--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_106850_010--Hb_002835_420 Hb_126973_010 Hb_126973_010 Hb_106850_010--Hb_126973_010 Hb_106850_010--Hb_003144_020 Hb_005914_030--Hb_005224_020 Hb_005914_030--Hb_003144_020 Hb_005914_030--Hb_000959_380 Hb_005914_030--Hb_131816_010 Hb_003144_020--Hb_000959_380 Hb_003144_020--Hb_005224_020 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_131816_010--Hb_000959_380 Hb_131816_010--Hb_003144_020 Hb_131816_010--Hb_005224_020 Hb_000959_380--Hb_104509_010 Hb_000959_380--Hb_000326_100 Hb_000959_380--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0312708 0.627114 0.43872 0.00487733 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0137681 52.7231

CAGE analysis