Hb_000959_380

Information

Type -
Description -
Location Contig959: 370514-372276
Sequence    

Annotation

kegg
ID vvi:104877907
description (-)-alpha-terpineol synthase-like
nr
ID XP_010645664.1
description PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6I5S5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03690 PE=4 SV=1
Gene Ontology
ID GO:0000287
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_380 0.0 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
2 Hb_003144_020 0.0387527546 - - (R)-limonene synthase, putative [Ricinus communis]
3 Hb_131816_010 0.0408320049 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_005914_030 0.0465883898 - - -
5 Hb_104509_010 0.0466103337 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
6 Hb_000326_100 0.0467579922 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
7 Hb_005224_020 0.0467792132 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_006302_050 0.0476718564 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
9 Hb_072695_010 0.0704276387 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_106850_010 0.0707383949 - - photosystem II protein D2 [Lactuca sativa]
11 Hb_000388_020 0.072561889 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
12 Hb_154980_010 0.0747778106 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
13 Hb_103255_010 0.0799329731 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_002835_420 0.0800092223 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
15 Hb_054839_010 0.0802601077 - - PsbC, partial (chloroplast) [Asimina parviflora]
16 Hb_007645_020 0.0810488449 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
17 Hb_001790_110 0.0817520996 - - unknown [Populus trichocarpa]
18 Hb_005054_140 0.0830908859 - - PREDICTED: laccase-4-like [Jatropha curcas]
19 Hb_005622_090 0.0842331449 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
20 Hb_125153_010 0.0855366738 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]

Gene co-expression network

sample Hb_000959_380 Hb_000959_380 Hb_003144_020 Hb_003144_020 Hb_000959_380--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_000959_380--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_000959_380--Hb_005914_030 Hb_104509_010 Hb_104509_010 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_005224_020 Hb_005224_020 Hb_000959_380--Hb_005224_020 Hb_003144_020--Hb_104509_010 Hb_003144_020--Hb_005224_020 Hb_006302_050 Hb_006302_050 Hb_003144_020--Hb_006302_050 Hb_003144_020--Hb_000326_100 Hb_003144_020--Hb_005914_030 Hb_131816_010--Hb_104509_010 Hb_131816_010--Hb_006302_050 Hb_131816_010--Hb_003144_020 Hb_131816_010--Hb_005224_020 Hb_131816_010--Hb_005914_030 Hb_005914_030--Hb_005224_020 Hb_005914_030--Hb_006302_050 Hb_005914_030--Hb_104509_010 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_005224_020 Hb_000326_100--Hb_131816_010 Hb_000326_100--Hb_104509_010 Hb_000326_100--Hb_005224_020 Hb_000326_100--Hb_005914_030 Hb_005224_020--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.196066 1.46864 1.09111 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118867 0.187008 0 0.486759 236.471

CAGE analysis