Hb_005224_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5224: 53202-53949
Sequence    

Annotation

kegg
ID rcu:RCOM_1675480
description DNA binding protein, putative
nr
ID XP_002509490.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q58FS3
description Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1
trembl
ID B9RBF6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1675480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005224_020 0.0 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
2 Hb_005914_030 0.0201940186 - - -
3 Hb_003144_020 0.0414197944 - - (R)-limonene synthase, putative [Ricinus communis]
4 Hb_104509_010 0.0445588291 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
5 Hb_000959_380 0.0467792132 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
6 Hb_006302_050 0.0477836117 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
7 Hb_131816_010 0.0553366737 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_005622_090 0.0587552796 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
9 Hb_002395_010 0.0605731142 - - -
10 Hb_000326_100 0.0634561282 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_012184_020 0.0642420697 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010172_020 0.0657984975 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
13 Hb_000002_470 0.0678195804 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
14 Hb_000003_630 0.0678195804 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_000004_050 0.0678195804 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
16 Hb_000007_350 0.0678195804 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000010_490 0.0678195804 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
18 Hb_000017_170 0.0678195804 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
19 Hb_000017_240 0.0678195804 - - -
20 Hb_000022_030 0.0678195804 - - Uncharacterized protein TCM_003129 [Theobroma cacao]

Gene co-expression network

sample Hb_005224_020 Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_005224_020--Hb_005914_030 Hb_003144_020 Hb_003144_020 Hb_005224_020--Hb_003144_020 Hb_104509_010 Hb_104509_010 Hb_005224_020--Hb_104509_010 Hb_000959_380 Hb_000959_380 Hb_005224_020--Hb_000959_380 Hb_006302_050 Hb_006302_050 Hb_005224_020--Hb_006302_050 Hb_131816_010 Hb_131816_010 Hb_005224_020--Hb_131816_010 Hb_005914_030--Hb_006302_050 Hb_005914_030--Hb_104509_010 Hb_005914_030--Hb_003144_020 Hb_005914_030--Hb_000959_380 Hb_005914_030--Hb_131816_010 Hb_003144_020--Hb_104509_010 Hb_003144_020--Hb_000959_380 Hb_003144_020--Hb_006302_050 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_131816_010 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_104509_010 Hb_000959_380--Hb_000326_100 Hb_006302_050--Hb_106850_010 Hb_006302_050--Hb_131816_010 Hb_006302_050--Hb_000959_380 Hb_131816_010--Hb_003144_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.285965 3.97768 0.972755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 565.891

CAGE analysis