Hb_005914_030

Information

Type -
Description -
Location Contig5914: 16854-18098
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50219: 16764-17334 , PASA_asmbl_50220: 17360-18303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_030 0.0 - - -
2 Hb_005224_020 0.0201940186 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_006302_050 0.0421015285 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
4 Hb_104509_010 0.0423967856 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
5 Hb_003144_020 0.0459064197 - - (R)-limonene synthase, putative [Ricinus communis]
6 Hb_000959_380 0.0465883898 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
7 Hb_131816_010 0.0587983039 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_005622_090 0.0631319206 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
9 Hb_002395_010 0.0648467316 - - -
10 Hb_000326_100 0.0676954755 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_012184_020 0.0683227208 - - conserved hypothetical protein [Ricinus communis]
12 Hb_106850_010 0.0683841118 - - photosystem II protein D2 [Lactuca sativa]
13 Hb_000002_470 0.0707308743 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
14 Hb_000003_630 0.0707308743 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_000004_050 0.0707308743 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
16 Hb_000007_350 0.0707308743 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000010_490 0.0707308743 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
18 Hb_000017_170 0.0707308743 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
19 Hb_000017_240 0.0707308743 - - -
20 Hb_000022_030 0.0707308743 - - Uncharacterized protein TCM_003129 [Theobroma cacao]

Gene co-expression network

sample Hb_005914_030 Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_005914_030--Hb_005224_020 Hb_006302_050 Hb_006302_050 Hb_005914_030--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_005914_030--Hb_104509_010 Hb_003144_020 Hb_003144_020 Hb_005914_030--Hb_003144_020 Hb_000959_380 Hb_000959_380 Hb_005914_030--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_005914_030--Hb_131816_010 Hb_005224_020--Hb_003144_020 Hb_005224_020--Hb_104509_010 Hb_005224_020--Hb_000959_380 Hb_005224_020--Hb_006302_050 Hb_005224_020--Hb_131816_010 Hb_006302_050--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_006302_050--Hb_106850_010 Hb_006302_050--Hb_003144_020 Hb_006302_050--Hb_131816_010 Hb_006302_050--Hb_000959_380 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_003144_020--Hb_000959_380 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_104509_010 Hb_000959_380--Hb_000326_100 Hb_131816_010--Hb_003144_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.72275 3.55725 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1120.15

CAGE analysis