Hb_003144_020

Information

Type -
Description -
Location Contig3144: 22734-25014
Sequence    

Annotation

kegg
ID rcu:RCOM_1732250
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_002522212.1
description (R)-limonene synthase, putative [Ricinus communis]
swissprot
ID P85964
description Alpha-bisabolene synthase (Fragments) OS=Pseudotsuga menziesii PE=1 SV=1
trembl
ID B9S893
description (R)-limonene synthase, putative OS=Ricinus communis GN=RCOM_1732250 PE=4 SV=1
Gene Ontology
ID GO:0000287
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003144_020 0.0 - - (R)-limonene synthase, putative [Ricinus communis]
2 Hb_104509_010 0.0376573962 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
3 Hb_000959_380 0.0387527546 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
4 Hb_005224_020 0.0414197944 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
5 Hb_006302_050 0.0432435813 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
6 Hb_000326_100 0.0435223129 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
7 Hb_005914_030 0.0459064197 - - -
8 Hb_131816_010 0.0466905515 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_106850_010 0.0569273383 - - photosystem II protein D2 [Lactuca sativa]
10 Hb_154980_010 0.0572907932 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
11 Hb_010172_020 0.0624178788 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
12 Hb_005622_090 0.0628372128 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
13 Hb_002835_420 0.0630227934 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
14 Hb_002395_010 0.0638587665 - - -
15 Hb_012184_020 0.0660597289 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003144_040 0.0705207047 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_001627_070 0.0742989633 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
18 Hb_000388_020 0.0757847332 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
19 Hb_126973_010 0.0777995461 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
20 Hb_000574_080 0.0802754049 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003144_020 Hb_003144_020 Hb_104509_010 Hb_104509_010 Hb_003144_020--Hb_104509_010 Hb_000959_380 Hb_000959_380 Hb_003144_020--Hb_000959_380 Hb_005224_020 Hb_005224_020 Hb_003144_020--Hb_005224_020 Hb_006302_050 Hb_006302_050 Hb_003144_020--Hb_006302_050 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_005914_030 Hb_005914_030 Hb_003144_020--Hb_005914_030 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_104509_010--Hb_005224_020 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000959_380--Hb_000326_100 Hb_000959_380--Hb_005224_020 Hb_005224_020--Hb_005914_030 Hb_005224_020--Hb_006302_050 Hb_005224_020--Hb_131816_010 Hb_006302_050--Hb_106850_010 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_131816_010 Hb_006302_050--Hb_000959_380 Hb_000326_100--Hb_131816_010 Hb_000326_100--Hb_104509_010 Hb_000326_100--Hb_005224_020 Hb_000326_100--Hb_005914_030 Hb_005914_030--Hb_131816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0401922 0.629278 5.91261 1.54806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662301 0.173573 0 0.164318 499.724

CAGE analysis