Hb_000326_100

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig326: 153462-154358
Sequence    

Annotation

kegg
ID brp:103842504
description protein RADIALIS-like 2
nr
ID XP_010088924.1
description DnaJ homolog subfamily C member 2 [Morus notabilis]
swissprot
ID Q58FS3
description Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1
trembl
ID W9QGR5
description DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homolog subfamily c member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34314: 153472-154436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_100 0.0 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
2 Hb_003144_020 0.0435223129 - - (R)-limonene synthase, putative [Ricinus communis]
3 Hb_000959_380 0.0467579922 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
4 Hb_131816_010 0.0613026558 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_104509_010 0.0618143964 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
6 Hb_005224_020 0.0634561282 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
7 Hb_005914_030 0.0676954755 - - -
8 Hb_154980_010 0.0687674732 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_006302_050 0.0694699983 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
10 Hb_106850_010 0.0732593647 - - photosystem II protein D2 [Lactuca sativa]
11 Hb_002835_420 0.0755454729 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
12 Hb_005622_090 0.07848431 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
13 Hb_002395_010 0.0794108857 - - -
14 Hb_010172_020 0.0798423979 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
15 Hb_012184_020 0.0813952727 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007645_020 0.081960013 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
17 Hb_003688_030 0.0836379123 - - NADH dehydrogenase 2-like ORF 180
18 Hb_103255_010 0.0864428686 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_003144_040 0.0866908423 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_001627_070 0.0887882308 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000326_100 Hb_000326_100 Hb_003144_020 Hb_003144_020 Hb_000326_100--Hb_003144_020 Hb_000959_380 Hb_000959_380 Hb_000326_100--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_000326_100--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_000326_100--Hb_104509_010 Hb_005224_020 Hb_005224_020 Hb_000326_100--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_000326_100--Hb_005914_030 Hb_003144_020--Hb_104509_010 Hb_003144_020--Hb_000959_380 Hb_003144_020--Hb_005224_020 Hb_006302_050 Hb_006302_050 Hb_003144_020--Hb_006302_050 Hb_003144_020--Hb_005914_030 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000959_380--Hb_005224_020 Hb_131816_010--Hb_104509_010 Hb_131816_010--Hb_006302_050 Hb_131816_010--Hb_003144_020 Hb_131816_010--Hb_005224_020 Hb_131816_010--Hb_005914_030 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_005914_030 Hb_104509_010--Hb_005224_020 Hb_005224_020--Hb_005914_030 Hb_005224_020--Hb_006302_050 Hb_005914_030--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145713 0.56983 6.10121 1.11403 0 0.176219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.859619 1.35038 0.663438 1.02765 564.053

CAGE analysis