Hb_104509_010

Information

Type -
Description -
Location Contig104509: 1179-2159
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00030
description psbC; photosystem II 44 kDa protein
nr
ID ADD30645.1
description photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
swissprot
ID Q09G50
description Photosystem II CP43 reaction center protein OS=Platanus occidentalis GN=psbC PE=3 SV=1
trembl
ID D3WE01
description Photosystem II CP43 reaction center protein OS=Ficus sp. Moore 315 GN=psbC PE=3 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii cp43 chlorophyll apoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104509_010 0.0 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
2 Hb_006302_050 0.0164406443 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
3 Hb_106850_010 0.0333554411 - - photosystem II protein D2 [Lactuca sativa]
4 Hb_003144_020 0.0376573962 - - (R)-limonene synthase, putative [Ricinus communis]
5 Hb_131816_010 0.0420101456 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_005914_030 0.0423967856 - - -
7 Hb_005224_020 0.0445588291 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_154980_010 0.0448763629 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_000959_380 0.0466103337 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
10 Hb_002835_420 0.0470390573 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
11 Hb_000388_020 0.0604372484 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
12 Hb_126973_010 0.0611117133 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
13 Hb_000326_100 0.0618143964 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
14 Hb_054839_010 0.0684058556 - - PsbC, partial (chloroplast) [Asimina parviflora]
15 Hb_005622_090 0.0698128129 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
16 Hb_002395_010 0.0707053228 - - -
17 Hb_010172_020 0.0712165861 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
18 Hb_012184_020 0.0726446365 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007645_020 0.0776180321 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
20 Hb_003688_030 0.0790245258 - - NADH dehydrogenase 2-like ORF 180

Gene co-expression network

sample Hb_104509_010 Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_003144_020 Hb_003144_020 Hb_104509_010--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_006302_050--Hb_106850_010 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_003144_020 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_154980_010 Hb_154980_010 Hb_106850_010--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_106850_010--Hb_002835_420 Hb_126973_010 Hb_126973_010 Hb_106850_010--Hb_126973_010 Hb_106850_010--Hb_003144_020 Hb_003144_020--Hb_000959_380 Hb_003144_020--Hb_005224_020 Hb_000326_100 Hb_000326_100 Hb_003144_020--Hb_000326_100 Hb_003144_020--Hb_005914_030 Hb_131816_010--Hb_000959_380 Hb_131816_010--Hb_003144_020 Hb_131816_010--Hb_005224_020 Hb_131816_010--Hb_005914_030 Hb_005914_030--Hb_005224_020 Hb_005914_030--Hb_000959_380 Hb_005224_020--Hb_000959_380 Hb_005224_020--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0703232 1.09486 12.7996 7.11985 0.159462 0.133341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0506315 0.0918789 0.225161 1060.89

CAGE analysis