Hb_126973_010

Information

Type -
Description -
Location Contig126973: 53-1012
Sequence    

Annotation

kegg
ID vvi:100256005
description probable LRR receptor-like serine/threonine-protein kinase At1g34110
nr
ID XP_010655822.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067GY28
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0052781mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126973_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
2 Hb_106850_010 0.0492473347 - - photosystem II protein D2 [Lactuca sativa]
3 Hb_154980_010 0.051382568 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
4 Hb_002835_420 0.0517209265 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
5 Hb_005018_050 0.0601438133 - - PREDICTED: licodione synthase-like [Jatropha curcas]
6 Hb_006302_050 0.0602049511 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
7 Hb_104509_010 0.0611117133 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
8 Hb_003407_050 0.0618949549 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_031194_030 0.0624315523 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
10 Hb_002704_090 0.0712741911 - - cytochrome P450, putative [Ricinus communis]
11 Hb_003120_090 0.0726682571 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
12 Hb_000388_020 0.0733294265 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
13 Hb_007645_050 0.0736599217 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
14 Hb_000938_050 0.0760762536 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
15 Hb_088080_010 0.077212896 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
16 Hb_003144_020 0.0777995461 - - (R)-limonene synthase, putative [Ricinus communis]
17 Hb_054839_010 0.0786707282 - - PsbC, partial (chloroplast) [Asimina parviflora]
18 Hb_003963_030 0.0792367904 - - psbB [Jatropha curcas]
19 Hb_012184_020 0.079855748 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001627_070 0.0801568391 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_126973_010 Hb_126973_010 Hb_106850_010 Hb_106850_010 Hb_126973_010--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_126973_010--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_126973_010--Hb_002835_420 Hb_005018_050 Hb_005018_050 Hb_126973_010--Hb_005018_050 Hb_006302_050 Hb_006302_050 Hb_126973_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_126973_010--Hb_104509_010 Hb_106850_010--Hb_154980_010 Hb_106850_010--Hb_002835_420 Hb_106850_010--Hb_104509_010 Hb_106850_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020 Hb_154980_010--Hb_002835_420 Hb_154980_010--Hb_104509_010 Hb_154980_010--Hb_006302_050 Hb_031194_030 Hb_031194_030 Hb_154980_010--Hb_031194_030 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_002835_420--Hb_006302_050 Hb_003407_050 Hb_003407_050 Hb_005018_050--Hb_003407_050 Hb_003120_090 Hb_003120_090 Hb_005018_050--Hb_003120_090 Hb_005018_050--Hb_031194_030 Hb_002704_090 Hb_002704_090 Hb_005018_050--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_005018_050--Hb_007933_010 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010 Hb_006302_050--Hb_104509_010 Hb_005914_030 Hb_005914_030 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.197907 0.0793988 0 0.0260718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.04169

CAGE analysis