Hb_002704_090

Information

Type -
Description -
Location Contig2704: 148457-157895
Sequence    

Annotation

kegg
ID rcu:RCOM_0405700
description cytochrome P450, putative (EC:1.14.13.87)
nr
ID XP_002532402.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q42799
description Cytochrome P450 93A2 OS=Glycine max GN=CYP93A2 PE=2 SV=1
trembl
ID B9T2D3
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0405700 PE=3 SV=1
Gene Ontology
ID GO:0005506
description -dihydroxypterocarpan 6a-monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28372: 151028-151355 , PASA_asmbl_28373: 153673-153846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002704_090 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_002093_010 0.022569932 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
3 Hb_000627_060 0.0318165297 - - -
4 Hb_003120_090 0.0325153935 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
5 Hb_005018_050 0.0394662172 - - PREDICTED: licodione synthase-like [Jatropha curcas]
6 Hb_007933_010 0.0443319216 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_031194_030 0.0460195422 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
8 Hb_007741_060 0.0476443405 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
9 Hb_006435_020 0.0476876734 - - sugar transporter, putative [Ricinus communis]
10 Hb_003407_050 0.0513686974 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_000853_280 0.0552668362 - - PREDICTED: extensin-like [Jatropha curcas]
12 Hb_002276_110 0.0580904406 - - protein binding protein, putative [Ricinus communis]
13 Hb_059280_010 0.0581170797 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
14 Hb_007219_010 0.0587876693 - - -
15 Hb_004567_080 0.0666195682 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
16 Hb_004643_030 0.0666500285 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000938_050 0.0682089529 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
18 Hb_088080_010 0.0698210845 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
19 Hb_177343_020 0.0700070721 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
20 Hb_000574_080 0.0708031127 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_002704_090 Hb_002704_090 Hb_002093_010 Hb_002093_010 Hb_002704_090--Hb_002093_010 Hb_000627_060 Hb_000627_060 Hb_002704_090--Hb_000627_060 Hb_003120_090 Hb_003120_090 Hb_002704_090--Hb_003120_090 Hb_005018_050 Hb_005018_050 Hb_002704_090--Hb_005018_050 Hb_007933_010 Hb_007933_010 Hb_002704_090--Hb_007933_010 Hb_031194_030 Hb_031194_030 Hb_002704_090--Hb_031194_030 Hb_002093_010--Hb_000627_060 Hb_007741_060 Hb_007741_060 Hb_002093_010--Hb_007741_060 Hb_002093_010--Hb_007933_010 Hb_006435_020 Hb_006435_020 Hb_002093_010--Hb_006435_020 Hb_002093_010--Hb_003120_090 Hb_000627_060--Hb_007741_060 Hb_000627_060--Hb_006435_020 Hb_004567_080 Hb_004567_080 Hb_000627_060--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_000627_060--Hb_004643_030 Hb_003120_090--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_003120_090--Hb_003407_050 Hb_003120_090--Hb_007933_010 Hb_003120_090--Hb_031194_030 Hb_000853_280 Hb_000853_280 Hb_003120_090--Hb_000853_280 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_031194_030 Hb_005018_050--Hb_007933_010 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010 Hb_007933_010--Hb_000853_280 Hb_007933_010--Hb_000627_060 Hb_031194_030--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_031194_030--Hb_007595_030 Hb_031194_030--Hb_003407_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.418781 0.0573386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.0425

CAGE analysis