Hb_007741_060

Information

Type -
Description -
Location Contig7741: 56436-56831
Sequence    

Annotation

kegg
ID rcu:RCOM_1610710
description 14 kDa proline-rich protein DC2.15 precursor, putative
nr
ID XP_012083617.1
description PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
swissprot
ID Q8RW93
description Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1
trembl
ID A0A067KAF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_N23.ab1: 56392-56988 , 027_B10.ab1: 56390-57105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_060 0.0 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
2 Hb_000627_060 0.0160334731 - - -
3 Hb_002093_010 0.0294702061 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
4 Hb_006435_020 0.0328183953 - - sugar transporter, putative [Ricinus communis]
5 Hb_177343_020 0.0328268153 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
6 Hb_004643_030 0.0330481759 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004567_080 0.0330564416 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
8 Hb_035265_020 0.0369462008 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000648_090 0.043043801 - - -
10 Hb_002704_090 0.0476443405 - - cytochrome P450, putative [Ricinus communis]
11 Hb_002276_110 0.0487955921 - - protein binding protein, putative [Ricinus communis]
12 Hb_002421_170 0.0492260548 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
13 Hb_059280_010 0.0509602367 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
14 Hb_007219_010 0.056554331 - - -
15 Hb_007933_010 0.0568402424 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_001511_040 0.0596526688 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
17 Hb_000853_280 0.0656627269 - - PREDICTED: extensin-like [Jatropha curcas]
18 Hb_003120_090 0.0712970819 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
19 Hb_003053_100 0.0741403935 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
20 Hb_006495_030 0.0809428971 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]

Gene co-expression network

sample Hb_007741_060 Hb_007741_060 Hb_000627_060 Hb_000627_060 Hb_007741_060--Hb_000627_060 Hb_002093_010 Hb_002093_010 Hb_007741_060--Hb_002093_010 Hb_006435_020 Hb_006435_020 Hb_007741_060--Hb_006435_020 Hb_177343_020 Hb_177343_020 Hb_007741_060--Hb_177343_020 Hb_004643_030 Hb_004643_030 Hb_007741_060--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_007741_060--Hb_004567_080 Hb_000627_060--Hb_002093_010 Hb_000627_060--Hb_006435_020 Hb_002704_090 Hb_002704_090 Hb_000627_060--Hb_002704_090 Hb_000627_060--Hb_004567_080 Hb_000627_060--Hb_004643_030 Hb_002093_010--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_002093_010--Hb_007933_010 Hb_002093_010--Hb_006435_020 Hb_003120_090 Hb_003120_090 Hb_002093_010--Hb_003120_090 Hb_006435_020--Hb_002704_090 Hb_006435_020--Hb_004567_080 Hb_006435_020--Hb_004643_030 Hb_177343_020--Hb_004643_030 Hb_177343_020--Hb_004567_080 Hb_035265_020 Hb_035265_020 Hb_177343_020--Hb_035265_020 Hb_000648_090 Hb_000648_090 Hb_177343_020--Hb_000648_090 Hb_002421_170 Hb_002421_170 Hb_177343_020--Hb_002421_170 Hb_004643_030--Hb_004567_080 Hb_004643_030--Hb_035265_020 Hb_002276_110 Hb_002276_110 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_000648_090 Hb_004567_080--Hb_035265_020 Hb_004567_080--Hb_002276_110 Hb_004567_080--Hb_000648_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 25.5609 0.783192 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 338.794

CAGE analysis