Hb_000648_090

Information

Type -
Description -
Location Contig648: 119776-122676
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52426: 122004-122624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_090 0.0 - - -
2 Hb_002421_170 0.0088444975 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
3 Hb_035265_020 0.0108556147 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_001511_040 0.0220014558 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
5 Hb_177343_020 0.0258608304 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
6 Hb_004643_030 0.0322749563 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004567_080 0.0323372588 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
8 Hb_007741_060 0.043043801 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
9 Hb_000692_240 0.0490433255 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
10 Hb_020327_010 0.0528059794 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
11 Hb_049187_010 0.057493331 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_000627_060 0.0576578134 - - -
13 Hb_006435_020 0.0616683857 - - sugar transporter, putative [Ricinus communis]
14 Hb_002276_110 0.0639626772 - - protein binding protein, putative [Ricinus communis]
15 Hb_059280_010 0.0668146941 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
16 Hb_002093_010 0.0690059174 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
17 Hb_007219_010 0.073824942 - - -
18 Hb_003053_100 0.0837862533 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_007933_010 0.086967556 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_002704_090 0.0869750569 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000648_090 Hb_000648_090 Hb_002421_170 Hb_002421_170 Hb_000648_090--Hb_002421_170 Hb_035265_020 Hb_035265_020 Hb_000648_090--Hb_035265_020 Hb_001511_040 Hb_001511_040 Hb_000648_090--Hb_001511_040 Hb_177343_020 Hb_177343_020 Hb_000648_090--Hb_177343_020 Hb_004643_030 Hb_004643_030 Hb_000648_090--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_000648_090--Hb_004567_080 Hb_002421_170--Hb_001511_040 Hb_002421_170--Hb_035265_020 Hb_002421_170--Hb_177343_020 Hb_000692_240 Hb_000692_240 Hb_002421_170--Hb_000692_240 Hb_002421_170--Hb_004643_030 Hb_035265_020--Hb_177343_020 Hb_035265_020--Hb_004643_030 Hb_035265_020--Hb_004567_080 Hb_035265_020--Hb_001511_040 Hb_001511_040--Hb_000692_240 Hb_020327_010 Hb_020327_010 Hb_001511_040--Hb_020327_010 Hb_049187_010 Hb_049187_010 Hb_001511_040--Hb_049187_010 Hb_177343_020--Hb_004643_030 Hb_177343_020--Hb_004567_080 Hb_007741_060 Hb_007741_060 Hb_177343_020--Hb_007741_060 Hb_004643_030--Hb_004567_080 Hb_002276_110 Hb_002276_110 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_007741_060 Hb_004567_080--Hb_002276_110 Hb_004567_080--Hb_007741_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.103809 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.07742

CAGE analysis