Hb_020327_010

Information

Type -
Description -
Location Contig20327: 2867-3166
Sequence    

Annotation

kegg
ID bvg:104886355
description uncharacterized LOC104886355
nr
ID XP_010669116.1
description PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A5B3J2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020327_010 0.0 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
2 Hb_000692_240 0.00377631 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
3 Hb_049187_010 0.0047068999 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_001511_040 0.0308580344 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
5 Hb_012758_010 0.0370868717 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
6 Hb_002818_140 0.0371580963 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005271_210 0.0404128542 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
8 Hb_002421_170 0.0439931757 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
9 Hb_011994_050 0.0462107569 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_004870_030 0.0474403587 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000612_060 0.0502557553 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_000383_040 0.0503759335 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_029613_010 0.0513956574 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_013093_010 0.0519790587 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
15 Hb_000648_090 0.0528059794 - - -
16 Hb_012398_020 0.0528289261 - - hypothetical protein RCOM_0641040 [Ricinus communis]
17 Hb_004557_020 0.0530813386 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
18 Hb_003007_020 0.0545963087 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
19 Hb_034691_020 0.0551679604 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_003608_020 0.055762308 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]

Gene co-expression network

sample Hb_020327_010 Hb_020327_010 Hb_000692_240 Hb_000692_240 Hb_020327_010--Hb_000692_240 Hb_049187_010 Hb_049187_010 Hb_020327_010--Hb_049187_010 Hb_001511_040 Hb_001511_040 Hb_020327_010--Hb_001511_040 Hb_012758_010 Hb_012758_010 Hb_020327_010--Hb_012758_010 Hb_002818_140 Hb_002818_140 Hb_020327_010--Hb_002818_140 Hb_005271_210 Hb_005271_210 Hb_020327_010--Hb_005271_210 Hb_000692_240--Hb_049187_010 Hb_000692_240--Hb_001511_040 Hb_002421_170 Hb_002421_170 Hb_000692_240--Hb_002421_170 Hb_000692_240--Hb_012758_010 Hb_000692_240--Hb_002818_140 Hb_049187_010--Hb_012758_010 Hb_049187_010--Hb_002818_140 Hb_049187_010--Hb_001511_040 Hb_049187_010--Hb_005271_210 Hb_001511_040--Hb_002421_170 Hb_000648_090 Hb_000648_090 Hb_001511_040--Hb_000648_090 Hb_035265_020 Hb_035265_020 Hb_001511_040--Hb_035265_020 Hb_012758_010--Hb_002818_140 Hb_012758_010--Hb_005271_210 Hb_011994_050 Hb_011994_050 Hb_012758_010--Hb_011994_050 Hb_004870_030 Hb_004870_030 Hb_012758_010--Hb_004870_030 Hb_000612_060 Hb_000612_060 Hb_012758_010--Hb_000612_060 Hb_000383_040 Hb_000383_040 Hb_012758_010--Hb_000383_040 Hb_002818_140--Hb_005271_210 Hb_002818_140--Hb_011994_050 Hb_002818_140--Hb_004870_030 Hb_002818_140--Hb_000612_060 Hb_002818_140--Hb_000383_040 Hb_005271_210--Hb_011994_050 Hb_005271_210--Hb_004870_030 Hb_005271_210--Hb_000612_060 Hb_005271_210--Hb_000383_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.131539 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.910465

CAGE analysis