Hb_000383_040

Information

Type -
Description -
Location Contig383: 45061-53944
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A5B3J2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000383_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_000612_060 0.0001204788 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_029613_010 0.0010223262 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_013093_010 0.0016072579 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
5 Hb_012398_020 0.0024594086 - - hypothetical protein RCOM_0641040 [Ricinus communis]
6 Hb_004557_020 0.0027125116 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
7 Hb_004870_030 0.002942545 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_011994_050 0.004174834 - - multicopper oxidase, putative [Ricinus communis]
9 Hb_003007_020 0.0042317429 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_034691_020 0.0048050546 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
11 Hb_003608_020 0.0054011582 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
12 Hb_005271_210 0.0099835193 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
13 Hb_001060_130 0.0109416931 - - -
14 Hb_002818_140 0.0132429355 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012758_010 0.0133142506 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
16 Hb_000977_230 0.0143073713 - - FT-like protein [Betula luminifera]
17 Hb_007926_030 0.0170751626 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
18 Hb_184798_050 0.0178141973 - - -
19 Hb_147503_020 0.0219044989 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0224104466 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_000383_040 Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_000383_040--Hb_000612_060 Hb_029613_010 Hb_029613_010 Hb_000383_040--Hb_029613_010 Hb_013093_010 Hb_013093_010 Hb_000383_040--Hb_013093_010 Hb_012398_020 Hb_012398_020 Hb_000383_040--Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_000383_040--Hb_004557_020 Hb_004870_030 Hb_004870_030 Hb_000383_040--Hb_004870_030 Hb_000612_060--Hb_029613_010 Hb_000612_060--Hb_013093_010 Hb_000612_060--Hb_012398_020 Hb_000612_060--Hb_004870_030 Hb_000612_060--Hb_004557_020 Hb_029613_010--Hb_013093_010 Hb_029613_010--Hb_012398_020 Hb_029613_010--Hb_004557_020 Hb_003007_020 Hb_003007_020 Hb_029613_010--Hb_003007_020 Hb_013093_010--Hb_012398_020 Hb_013093_010--Hb_004557_020 Hb_013093_010--Hb_003007_020 Hb_012398_020--Hb_004557_020 Hb_012398_020--Hb_003007_020 Hb_034691_020 Hb_034691_020 Hb_012398_020--Hb_034691_020 Hb_004557_020--Hb_003007_020 Hb_004557_020--Hb_034691_020 Hb_003608_020 Hb_003608_020 Hb_004557_020--Hb_003608_020 Hb_011994_050 Hb_011994_050 Hb_004870_030--Hb_011994_050 Hb_004870_030--Hb_029613_010 Hb_004870_030--Hb_013093_010 Hb_004870_030--Hb_012398_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152213 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0752698

CAGE analysis