Hb_003007_020

Information

Type -
Description -
Location Contig3007: 8622-10680
Sequence    

Annotation

kegg
ID gmx:102670328
description uncharacterized LOC102670328
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003007_020 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_034691_020 0.0005733219 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
3 Hb_003608_020 0.0011694387 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
4 Hb_004557_020 0.0015192467 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
5 Hb_012398_020 0.0017723506 - - hypothetical protein RCOM_0641040 [Ricinus communis]
6 Hb_013093_010 0.0026245008 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_029613_010 0.003209429 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000383_040 0.0042317429 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_000612_060 0.0043522198 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_001060_130 0.0067102194 - - -
11 Hb_004870_030 0.0071742085 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_011994_050 0.0084064445 - - multicopper oxidase, putative [Ricinus communis]
13 Hb_000977_230 0.0100761535 - - FT-like protein [Betula luminifera]
14 Hb_007926_030 0.0128442144 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
15 Hb_184798_050 0.01358333 - - -
16 Hb_005271_210 0.0142147206 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
17 Hb_002818_140 0.0174737896 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012758_010 0.0175450962 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
19 Hb_147503_020 0.0176741461 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0181801652 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_003007_020 Hb_003007_020 Hb_034691_020 Hb_034691_020 Hb_003007_020--Hb_034691_020 Hb_003608_020 Hb_003608_020 Hb_003007_020--Hb_003608_020 Hb_004557_020 Hb_004557_020 Hb_003007_020--Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_003007_020--Hb_012398_020 Hb_013093_010 Hb_013093_010 Hb_003007_020--Hb_013093_010 Hb_029613_010 Hb_029613_010 Hb_003007_020--Hb_029613_010 Hb_034691_020--Hb_003608_020 Hb_034691_020--Hb_004557_020 Hb_034691_020--Hb_012398_020 Hb_034691_020--Hb_013093_010 Hb_034691_020--Hb_029613_010 Hb_003608_020--Hb_004557_020 Hb_003608_020--Hb_012398_020 Hb_003608_020--Hb_013093_010 Hb_003608_020--Hb_029613_010 Hb_004557_020--Hb_012398_020 Hb_004557_020--Hb_013093_010 Hb_004557_020--Hb_029613_010 Hb_012398_020--Hb_013093_010 Hb_012398_020--Hb_029613_010 Hb_000383_040 Hb_000383_040 Hb_012398_020--Hb_000383_040 Hb_013093_010--Hb_029613_010 Hb_013093_010--Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_013093_010--Hb_000612_060 Hb_029613_010--Hb_000383_040 Hb_029613_010--Hb_000612_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.022499 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.108346

CAGE analysis