Hb_004557_020

Information

Type -
Description -
Location Contig4557: 6545-7535
Sequence    

Annotation

kegg
ID rcu:RCOM_0072320
description carbohydrate binding protein, putative (EC:2.7.11.22)
nr
ID XP_012072670.1
description PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
swissprot
ID Q9ZW11
description Putative inactive L-type lectin-domain containing receptor kinase III.2 OS=Arabidopsis thaliana GN=LECRK32 PE=3 SV=1
trembl
ID A0A067L011
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06732 PE=3 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004557_020 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
2 Hb_012398_020 0.0002531045 - - hypothetical protein RCOM_0641040 [Ricinus communis]
3 Hb_013093_010 0.001105258 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
4 Hb_003007_020 0.0015192467 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_029613_010 0.0016901895 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_034691_020 0.002092567 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
7 Hb_003608_020 0.0026886812 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
8 Hb_000383_040 0.0027125116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_000612_060 0.0028329896 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_004870_030 0.0056550164 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_011994_050 0.0068872758 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_001060_130 0.0082293938 - - -
13 Hb_000977_230 0.0115952482 - - FT-like protein [Betula luminifera]
14 Hb_005271_210 0.0126957199 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
15 Hb_007926_030 0.0143632223 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
16 Hb_184798_050 0.0151023115 - - -
17 Hb_002818_140 0.0159549253 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012758_010 0.0160262352 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
19 Hb_147503_020 0.0191929577 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.019698953 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_004557_020 Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_004557_020--Hb_012398_020 Hb_013093_010 Hb_013093_010 Hb_004557_020--Hb_013093_010 Hb_003007_020 Hb_003007_020 Hb_004557_020--Hb_003007_020 Hb_029613_010 Hb_029613_010 Hb_004557_020--Hb_029613_010 Hb_034691_020 Hb_034691_020 Hb_004557_020--Hb_034691_020 Hb_003608_020 Hb_003608_020 Hb_004557_020--Hb_003608_020 Hb_012398_020--Hb_013093_010 Hb_012398_020--Hb_029613_010 Hb_012398_020--Hb_003007_020 Hb_012398_020--Hb_034691_020 Hb_000383_040 Hb_000383_040 Hb_012398_020--Hb_000383_040 Hb_013093_010--Hb_029613_010 Hb_013093_010--Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_013093_010--Hb_000612_060 Hb_013093_010--Hb_003007_020 Hb_003007_020--Hb_034691_020 Hb_003007_020--Hb_003608_020 Hb_003007_020--Hb_029613_010 Hb_029613_010--Hb_000383_040 Hb_029613_010--Hb_000612_060 Hb_034691_020--Hb_003608_020 Hb_034691_020--Hb_013093_010 Hb_034691_020--Hb_029613_010 Hb_003608_020--Hb_012398_020 Hb_003608_020--Hb_013093_010 Hb_003608_020--Hb_029613_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0198711 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0966041

CAGE analysis