Hb_013093_010

Information

Type -
Description -
Location Contig13093: 6595-10435
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID ABF97047.1
description retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q10IE2
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g35560 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013093_010 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
2 Hb_029613_010 0.0005849325 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_012398_020 0.0008521537 - - hypothetical protein RCOM_0641040 [Ricinus communis]
4 Hb_004557_020 0.001105258 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
5 Hb_000383_040 0.0016072579 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_000612_060 0.0017277364 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_003007_020 0.0026245008 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_034691_020 0.0031978185 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
9 Hb_003608_020 0.0037939293 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
10 Hb_004870_030 0.0045497837 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_011994_050 0.0057820571 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_001060_130 0.0093345782 - - -
13 Hb_005271_210 0.0115906085 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
14 Hb_000977_230 0.0127003661 - - FT-like protein [Betula luminifera]
15 Hb_002818_140 0.014849905 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012758_010 0.0149212171 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
17 Hb_007926_030 0.0154682701 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
18 Hb_184798_050 0.0162073382 - - -
19 Hb_147503_020 0.0202978504 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0208038271 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_013093_010 Hb_013093_010 Hb_029613_010 Hb_029613_010 Hb_013093_010--Hb_029613_010 Hb_012398_020 Hb_012398_020 Hb_013093_010--Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_013093_010--Hb_004557_020 Hb_000383_040 Hb_000383_040 Hb_013093_010--Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_013093_010--Hb_000612_060 Hb_003007_020 Hb_003007_020 Hb_013093_010--Hb_003007_020 Hb_029613_010--Hb_000383_040 Hb_029613_010--Hb_000612_060 Hb_029613_010--Hb_012398_020 Hb_029613_010--Hb_004557_020 Hb_029613_010--Hb_003007_020 Hb_012398_020--Hb_004557_020 Hb_012398_020--Hb_003007_020 Hb_034691_020 Hb_034691_020 Hb_012398_020--Hb_034691_020 Hb_012398_020--Hb_000383_040 Hb_004557_020--Hb_003007_020 Hb_004557_020--Hb_034691_020 Hb_003608_020 Hb_003608_020 Hb_004557_020--Hb_003608_020 Hb_000383_040--Hb_000612_060 Hb_000383_040--Hb_004557_020 Hb_004870_030 Hb_004870_030 Hb_000383_040--Hb_004870_030 Hb_000612_060--Hb_012398_020 Hb_000612_060--Hb_004870_030 Hb_000612_060--Hb_004557_020 Hb_003007_020--Hb_034691_020 Hb_003007_020--Hb_003608_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00449222 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0219909

CAGE analysis