Hb_004870_030

Information

Type -
Description -
Location Contig4870: 39522-48956
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004870_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_011994_050 0.0012323026 - - multicopper oxidase, putative [Ricinus communis]
3 Hb_000612_060 0.0028220671 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_000383_040 0.002942545 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_029613_010 0.0039648606 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_013093_010 0.0045497837 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_012398_020 0.0054019188 - - hypothetical protein RCOM_0641040 [Ricinus communis]
8 Hb_004557_020 0.0056550164 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
9 Hb_005271_210 0.0070411634 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
10 Hb_003007_020 0.0071742085 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_034691_020 0.0077475023 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
12 Hb_003608_020 0.0083435856 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
13 Hb_002818_140 0.0103007599 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012758_010 0.0103720797 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
15 Hb_001060_130 0.0138838456 - - -
16 Hb_000977_230 0.0172492826 - - FT-like protein [Betula luminifera]
17 Hb_007926_030 0.0200168347 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
18 Hb_184798_050 0.0207557992 - - -
19 Hb_147503_020 0.0248456666 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0253515552 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_004870_030 Hb_004870_030 Hb_011994_050 Hb_011994_050 Hb_004870_030--Hb_011994_050 Hb_000612_060 Hb_000612_060 Hb_004870_030--Hb_000612_060 Hb_000383_040 Hb_000383_040 Hb_004870_030--Hb_000383_040 Hb_029613_010 Hb_029613_010 Hb_004870_030--Hb_029613_010 Hb_013093_010 Hb_013093_010 Hb_004870_030--Hb_013093_010 Hb_012398_020 Hb_012398_020 Hb_004870_030--Hb_012398_020 Hb_011994_050--Hb_000612_060 Hb_011994_050--Hb_000383_040 Hb_011994_050--Hb_029613_010 Hb_011994_050--Hb_013093_010 Hb_005271_210 Hb_005271_210 Hb_011994_050--Hb_005271_210 Hb_000612_060--Hb_000383_040 Hb_000612_060--Hb_029613_010 Hb_000612_060--Hb_013093_010 Hb_000612_060--Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_000612_060--Hb_004557_020 Hb_000383_040--Hb_029613_010 Hb_000383_040--Hb_013093_010 Hb_000383_040--Hb_012398_020 Hb_000383_040--Hb_004557_020 Hb_029613_010--Hb_013093_010 Hb_029613_010--Hb_012398_020 Hb_029613_010--Hb_004557_020 Hb_003007_020 Hb_003007_020 Hb_029613_010--Hb_003007_020 Hb_013093_010--Hb_012398_020 Hb_013093_010--Hb_004557_020 Hb_013093_010--Hb_003007_020 Hb_012398_020--Hb_004557_020 Hb_012398_020--Hb_003007_020 Hb_034691_020 Hb_034691_020 Hb_012398_020--Hb_034691_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00707276 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.035631

CAGE analysis