Hb_011994_050

Information

Type -
Description -
Location Contig11994: 63296-66833
Sequence    

Annotation

kegg
ID rcu:RCOM_0443120
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002532786.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q9SU40
description Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1
trembl
ID B9T3G7
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0443120 PE=4 SV=1
Gene Ontology
ID GO:0005507
description monocopper oxidase-like protein sku5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011994_050 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_004870_030 0.0012323026 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000612_060 0.004054357 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_000383_040 0.004174834 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_029613_010 0.0051971403 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_013093_010 0.0057820571 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_005271_210 0.0058089073 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
8 Hb_012398_020 0.0066341816 - - hypothetical protein RCOM_0641040 [Ricinus communis]
9 Hb_004557_020 0.0068872758 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
10 Hb_003007_020 0.0084064445 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_034691_020 0.0089797281 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
12 Hb_002818_140 0.0090685641 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012758_010 0.0091398855 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
14 Hb_003608_020 0.0095758001 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
15 Hb_001060_130 0.0151159193 - - -
16 Hb_000977_230 0.0184812397 - - FT-like protein [Betula luminifera]
17 Hb_007926_030 0.0212486787 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
18 Hb_184798_050 0.0219876105 - - -
19 Hb_147503_020 0.0260772771 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0265831386 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_011994_050 Hb_011994_050 Hb_004870_030 Hb_004870_030 Hb_011994_050--Hb_004870_030 Hb_000612_060 Hb_000612_060 Hb_011994_050--Hb_000612_060 Hb_000383_040 Hb_000383_040 Hb_011994_050--Hb_000383_040 Hb_029613_010 Hb_029613_010 Hb_011994_050--Hb_029613_010 Hb_013093_010 Hb_013093_010 Hb_011994_050--Hb_013093_010 Hb_005271_210 Hb_005271_210 Hb_011994_050--Hb_005271_210 Hb_004870_030--Hb_000612_060 Hb_004870_030--Hb_000383_040 Hb_004870_030--Hb_029613_010 Hb_004870_030--Hb_013093_010 Hb_012398_020 Hb_012398_020 Hb_004870_030--Hb_012398_020 Hb_000612_060--Hb_000383_040 Hb_000612_060--Hb_029613_010 Hb_000612_060--Hb_013093_010 Hb_000612_060--Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_000612_060--Hb_004557_020 Hb_000383_040--Hb_029613_010 Hb_000383_040--Hb_013093_010 Hb_000383_040--Hb_012398_020 Hb_000383_040--Hb_004557_020 Hb_029613_010--Hb_013093_010 Hb_029613_010--Hb_012398_020 Hb_029613_010--Hb_004557_020 Hb_003007_020 Hb_003007_020 Hb_029613_010--Hb_003007_020 Hb_013093_010--Hb_012398_020 Hb_013093_010--Hb_004557_020 Hb_013093_010--Hb_003007_020 Hb_002818_140 Hb_002818_140 Hb_005271_210--Hb_002818_140 Hb_012758_010 Hb_012758_010 Hb_005271_210--Hb_012758_010 Hb_005271_210--Hb_004870_030 Hb_005271_210--Hb_000612_060 Hb_005271_210--Hb_000383_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00816714 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0414671

CAGE analysis