Hb_002818_140

Information

Type -
Description -
Location Contig2818: 155494-155763
Sequence    

Annotation

kegg
ID rcu:RCOM_1342760
description hypothetical protein
nr
ID XP_002515164.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1342760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29500: 154280-155050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012758_010 7.1327e-05 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
3 Hb_005271_210 0.0032598185 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
4 Hb_011994_050 0.0090685641 - - multicopper oxidase, putative [Ricinus communis]
5 Hb_004870_030 0.0103007599 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000612_060 0.0131224758 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_000383_040 0.0132429355 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_029613_010 0.0142650853 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_013093_010 0.014849905 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
10 Hb_012398_020 0.0157018783 - - hypothetical protein RCOM_0641040 [Ricinus communis]
11 Hb_004557_020 0.0159549253 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
12 Hb_003007_020 0.0174737896 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_034691_020 0.0180469489 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
14 Hb_003608_020 0.0186428861 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
15 Hb_001060_130 0.0241814896 - - -
16 Hb_000977_230 0.0275456616 - - FT-like protein [Betula luminifera]
17 Hb_007926_030 0.0303120302 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
18 Hb_184798_050 0.0310506572 - - -
19 Hb_049187_010 0.0324575292 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_147503_020 0.0351384946 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]

Gene co-expression network

sample Hb_002818_140 Hb_002818_140 Hb_012758_010 Hb_012758_010 Hb_002818_140--Hb_012758_010 Hb_005271_210 Hb_005271_210 Hb_002818_140--Hb_005271_210 Hb_011994_050 Hb_011994_050 Hb_002818_140--Hb_011994_050 Hb_004870_030 Hb_004870_030 Hb_002818_140--Hb_004870_030 Hb_000612_060 Hb_000612_060 Hb_002818_140--Hb_000612_060 Hb_000383_040 Hb_000383_040 Hb_002818_140--Hb_000383_040 Hb_012758_010--Hb_005271_210 Hb_012758_010--Hb_011994_050 Hb_012758_010--Hb_004870_030 Hb_012758_010--Hb_000612_060 Hb_012758_010--Hb_000383_040 Hb_005271_210--Hb_011994_050 Hb_005271_210--Hb_004870_030 Hb_005271_210--Hb_000612_060 Hb_005271_210--Hb_000383_040 Hb_011994_050--Hb_004870_030 Hb_011994_050--Hb_000612_060 Hb_011994_050--Hb_000383_040 Hb_029613_010 Hb_029613_010 Hb_011994_050--Hb_029613_010 Hb_013093_010 Hb_013093_010 Hb_011994_050--Hb_013093_010 Hb_004870_030--Hb_000612_060 Hb_004870_030--Hb_000383_040 Hb_004870_030--Hb_029613_010 Hb_004870_030--Hb_013093_010 Hb_012398_020 Hb_012398_020 Hb_004870_030--Hb_012398_020 Hb_000612_060--Hb_000383_040 Hb_000612_060--Hb_029613_010 Hb_000612_060--Hb_013093_010 Hb_000612_060--Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_000612_060--Hb_004557_020 Hb_000383_040--Hb_029613_010 Hb_000383_040--Hb_013093_010 Hb_000383_040--Hb_012398_020 Hb_000383_040--Hb_004557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.631621 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.399

CAGE analysis