Hb_003608_020

Information

Type -
Description -
Location Contig3608: 51007-52760
Sequence    

Annotation

kegg
ID cit:102629728
description uncharacterized LOC102629728
nr
ID KDO46597.1
description hypothetical protein CISIN_1g041945mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067E5T2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041945mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003608_020 0.0 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
2 Hb_034691_020 0.0005961171 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
3 Hb_003007_020 0.0011694387 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
4 Hb_004557_020 0.0026886812 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
5 Hb_012398_020 0.002941784 - - hypothetical protein RCOM_0641040 [Ricinus communis]
6 Hb_013093_010 0.0037939293 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_029613_010 0.0043788533 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000383_040 0.0054011582 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_000612_060 0.0055216339 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_001060_130 0.005540818 - - -
11 Hb_004870_030 0.0083435856 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000977_230 0.0089068042 - - FT-like protein [Betula luminifera]
13 Hb_011994_050 0.0095758001 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_007926_030 0.0116749244 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
15 Hb_184798_050 0.0124140582 - - -
16 Hb_005271_210 0.015383931 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
17 Hb_147503_020 0.0165049939 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
18 Hb_006332_050 0.01701103 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
19 Hb_058242_010 0.0170565072 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
20 Hb_005305_180 0.0180356279 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]

Gene co-expression network

sample Hb_003608_020 Hb_003608_020 Hb_034691_020 Hb_034691_020 Hb_003608_020--Hb_034691_020 Hb_003007_020 Hb_003007_020 Hb_003608_020--Hb_003007_020 Hb_004557_020 Hb_004557_020 Hb_003608_020--Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_003608_020--Hb_012398_020 Hb_013093_010 Hb_013093_010 Hb_003608_020--Hb_013093_010 Hb_029613_010 Hb_029613_010 Hb_003608_020--Hb_029613_010 Hb_034691_020--Hb_003007_020 Hb_034691_020--Hb_004557_020 Hb_034691_020--Hb_012398_020 Hb_034691_020--Hb_013093_010 Hb_034691_020--Hb_029613_010 Hb_003007_020--Hb_004557_020 Hb_003007_020--Hb_012398_020 Hb_003007_020--Hb_013093_010 Hb_003007_020--Hb_029613_010 Hb_004557_020--Hb_012398_020 Hb_004557_020--Hb_013093_010 Hb_004557_020--Hb_029613_010 Hb_012398_020--Hb_013093_010 Hb_012398_020--Hb_029613_010 Hb_000383_040 Hb_000383_040 Hb_012398_020--Hb_000383_040 Hb_013093_010--Hb_029613_010 Hb_013093_010--Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_013093_010--Hb_000612_060 Hb_029613_010--Hb_000383_040 Hb_029613_010--Hb_000612_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0105031 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0502113

CAGE analysis