Hb_000692_240

Information

Type -
Description -
Location Contig692: 195762-196264
Sequence    

Annotation

kegg
ID rcu:RCOM_1599580
description Plastocyanin A, chloroplast precursor, putative
nr
ID XP_002510603.1
description Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P17340
description Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1
trembl
ID B9R8G0
description Plastocyanin A, chloroplast, putative OS=Ricinus communis GN=RCOM_1599580 PE=4 SV=1
Gene Ontology
ID GO:0009543
description plastocyanin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_240 0.0 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
2 Hb_020327_010 0.00377631 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
3 Hb_049187_010 0.0084830257 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_001511_040 0.0270859098 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
5 Hb_002421_170 0.0402260048 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
6 Hb_012758_010 0.0408566791 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
7 Hb_002818_140 0.0409278809 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005271_210 0.0441815577 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
9 Hb_000648_090 0.0490433255 - - -
10 Hb_011994_050 0.0499773527 - - multicopper oxidase, putative [Ricinus communis]
11 Hb_004870_030 0.0512064783 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000612_060 0.0540207467 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_000383_040 0.0541408756 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_029613_010 0.0551601773 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_013093_010 0.055743334 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_012398_020 0.0565928412 - - hypothetical protein RCOM_0641040 [Ricinus communis]
17 Hb_004557_020 0.0568451459 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
18 Hb_003007_020 0.05835946 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
19 Hb_034691_020 0.0589308604 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_003608_020 0.0595249446 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]

Gene co-expression network

sample Hb_000692_240 Hb_000692_240 Hb_020327_010 Hb_020327_010 Hb_000692_240--Hb_020327_010 Hb_049187_010 Hb_049187_010 Hb_000692_240--Hb_049187_010 Hb_001511_040 Hb_001511_040 Hb_000692_240--Hb_001511_040 Hb_002421_170 Hb_002421_170 Hb_000692_240--Hb_002421_170 Hb_012758_010 Hb_012758_010 Hb_000692_240--Hb_012758_010 Hb_002818_140 Hb_002818_140 Hb_000692_240--Hb_002818_140 Hb_020327_010--Hb_049187_010 Hb_020327_010--Hb_001511_040 Hb_020327_010--Hb_012758_010 Hb_020327_010--Hb_002818_140 Hb_005271_210 Hb_005271_210 Hb_020327_010--Hb_005271_210 Hb_049187_010--Hb_012758_010 Hb_049187_010--Hb_002818_140 Hb_049187_010--Hb_001511_040 Hb_049187_010--Hb_005271_210 Hb_001511_040--Hb_002421_170 Hb_000648_090 Hb_000648_090 Hb_001511_040--Hb_000648_090 Hb_035265_020 Hb_035265_020 Hb_001511_040--Hb_035265_020 Hb_002421_170--Hb_000648_090 Hb_002421_170--Hb_035265_020 Hb_177343_020 Hb_177343_020 Hb_002421_170--Hb_177343_020 Hb_004643_030 Hb_004643_030 Hb_002421_170--Hb_004643_030 Hb_012758_010--Hb_002818_140 Hb_012758_010--Hb_005271_210 Hb_011994_050 Hb_011994_050 Hb_012758_010--Hb_011994_050 Hb_004870_030 Hb_004870_030 Hb_012758_010--Hb_004870_030 Hb_000612_060 Hb_000612_060 Hb_012758_010--Hb_000612_060 Hb_000383_040 Hb_000383_040 Hb_012758_010--Hb_000383_040 Hb_002818_140--Hb_005271_210 Hb_002818_140--Hb_011994_050 Hb_002818_140--Hb_004870_030 Hb_002818_140--Hb_000612_060 Hb_002818_140--Hb_000383_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.15684 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.1152

CAGE analysis