Hb_002421_170

Information

Type -
Description -
Location Contig2421: 272823-281968
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18240g
description POPTRDRAFT_413517; hypothetical protein
nr
ID XP_002303860.2
description hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
swissprot
ID O94768
description Serine/threonine-protein kinase 17B OS=Homo sapiens GN=STK17B PE=1 SV=1
trembl
ID B9GVM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18240g PE=3 SV=2
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002421_170 0.0 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
2 Hb_000648_090 0.0088444975 - - -
3 Hb_001511_040 0.0131612388 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
4 Hb_035265_020 0.0196966611 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_177343_020 0.0346902433 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
6 Hb_000692_240 0.0402260048 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
7 Hb_004643_030 0.0410967543 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004567_080 0.0411589747 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_020327_010 0.0439931757 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
10 Hb_049187_010 0.0486865657 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_007741_060 0.0492260548 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
12 Hb_000627_060 0.0640857661 - - -
13 Hb_006435_020 0.0671102908 - - sugar transporter, putative [Ricinus communis]
14 Hb_002276_110 0.0727202092 - - protein binding protein, putative [Ricinus communis]
15 Hb_002093_010 0.0747783758 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
16 Hb_059280_010 0.0755640307 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
17 Hb_012758_010 0.0809160974 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
18 Hb_002818_140 0.0809868906 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007219_010 0.0825522583 - - -
20 Hb_003053_100 0.0835411674 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_002421_170 Hb_002421_170 Hb_000648_090 Hb_000648_090 Hb_002421_170--Hb_000648_090 Hb_001511_040 Hb_001511_040 Hb_002421_170--Hb_001511_040 Hb_035265_020 Hb_035265_020 Hb_002421_170--Hb_035265_020 Hb_177343_020 Hb_177343_020 Hb_002421_170--Hb_177343_020 Hb_000692_240 Hb_000692_240 Hb_002421_170--Hb_000692_240 Hb_004643_030 Hb_004643_030 Hb_002421_170--Hb_004643_030 Hb_000648_090--Hb_035265_020 Hb_000648_090--Hb_001511_040 Hb_000648_090--Hb_177343_020 Hb_000648_090--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_000648_090--Hb_004567_080 Hb_001511_040--Hb_000692_240 Hb_020327_010 Hb_020327_010 Hb_001511_040--Hb_020327_010 Hb_001511_040--Hb_035265_020 Hb_049187_010 Hb_049187_010 Hb_001511_040--Hb_049187_010 Hb_035265_020--Hb_177343_020 Hb_035265_020--Hb_004643_030 Hb_035265_020--Hb_004567_080 Hb_177343_020--Hb_004643_030 Hb_177343_020--Hb_004567_080 Hb_007741_060 Hb_007741_060 Hb_177343_020--Hb_007741_060 Hb_000692_240--Hb_020327_010 Hb_000692_240--Hb_049187_010 Hb_012758_010 Hb_012758_010 Hb_000692_240--Hb_012758_010 Hb_002818_140 Hb_002818_140 Hb_000692_240--Hb_002818_140 Hb_004643_030--Hb_004567_080 Hb_002276_110 Hb_002276_110 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_007741_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00805789 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0777848

CAGE analysis