Hb_004567_080

Information

Type -
Description -
Location Contig4567: 53277-54952
Sequence    

Annotation

kegg
ID rcu:RCOM_1719370
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_002521076.1
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q9SV60
description Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1
trembl
ID B9S507
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1719370 PE=3 SV=1
Gene Ontology
ID GO:0005618
description xyloglucan endotransglucosylase hydrolase protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_080 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
2 Hb_004643_030 6.24446e-05 - - conserved hypothetical protein [Ricinus communis]
3 Hb_177343_020 0.006488032 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
4 Hb_035265_020 0.0214970943 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_002276_110 0.0317829135 - - protein binding protein, putative [Ricinus communis]
6 Hb_000648_090 0.0323372588 - - -
7 Hb_007741_060 0.0330564416 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
8 Hb_059280_010 0.034658399 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
9 Hb_002421_170 0.0411589747 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
10 Hb_007219_010 0.041733662 - - -
11 Hb_000627_060 0.0421957785 - - -
12 Hb_006435_020 0.0505964996 - - sugar transporter, putative [Ricinus communis]
13 Hb_001511_040 0.0542667104 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
14 Hb_002093_010 0.0551408413 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
15 Hb_002704_090 0.0666195682 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000574_080 0.0729069266 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_004161_040 0.0771886527 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
18 Hb_000692_240 0.0811577972 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
19 Hb_007933_010 0.0815182627 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_001627_070 0.0816297884 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_004567_080 Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_004567_080--Hb_004643_030 Hb_177343_020 Hb_177343_020 Hb_004567_080--Hb_177343_020 Hb_035265_020 Hb_035265_020 Hb_004567_080--Hb_035265_020 Hb_002276_110 Hb_002276_110 Hb_004567_080--Hb_002276_110 Hb_000648_090 Hb_000648_090 Hb_004567_080--Hb_000648_090 Hb_007741_060 Hb_007741_060 Hb_004567_080--Hb_007741_060 Hb_004643_030--Hb_177343_020 Hb_004643_030--Hb_035265_020 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_000648_090 Hb_004643_030--Hb_007741_060 Hb_177343_020--Hb_035265_020 Hb_177343_020--Hb_000648_090 Hb_177343_020--Hb_007741_060 Hb_002421_170 Hb_002421_170 Hb_177343_020--Hb_002421_170 Hb_035265_020--Hb_000648_090 Hb_035265_020--Hb_002421_170 Hb_001511_040 Hb_001511_040 Hb_035265_020--Hb_001511_040 Hb_059280_010 Hb_059280_010 Hb_002276_110--Hb_059280_010 Hb_007219_010 Hb_007219_010 Hb_002276_110--Hb_007219_010 Hb_002276_110--Hb_177343_020 Hb_000574_080 Hb_000574_080 Hb_002276_110--Hb_000574_080 Hb_000648_090--Hb_002421_170 Hb_000648_090--Hb_001511_040 Hb_000627_060 Hb_000627_060 Hb_007741_060--Hb_000627_060 Hb_002093_010 Hb_002093_010 Hb_007741_060--Hb_002093_010 Hb_006435_020 Hb_006435_020 Hb_007741_060--Hb_006435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0203914 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.281596

CAGE analysis