Hb_000574_080

Information

Type -
Description -
Location Contig574: 73074-77450
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_080 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_001627_070 0.0089421452 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
3 Hb_012184_020 0.0230766664 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002395_010 0.0275281097 - - -
5 Hb_005622_090 0.0297666468 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
6 Hb_007219_010 0.0315121273 - - -
7 Hb_059280_010 0.0385841557 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
8 Hb_002276_110 0.0414511753 - - protein binding protein, putative [Ricinus communis]
9 Hb_010172_020 0.0548586826 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
10 Hb_003144_040 0.0618881456 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_004161_040 0.0684919914 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
12 Hb_002704_090 0.0708031127 - - cytochrome P450, putative [Ricinus communis]
13 Hb_004567_080 0.0729069266 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
14 Hb_004643_030 0.0729683623 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002835_420 0.0756572199 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
16 Hb_000627_060 0.0772712389 - - -
17 Hb_177343_020 0.079283603 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
18 Hb_003144_020 0.0802754049 - - (R)-limonene synthase, putative [Ricinus communis]
19 Hb_126973_010 0.081611469 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
20 Hb_002093_010 0.0826036017 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_080 Hb_000574_080 Hb_001627_070 Hb_001627_070 Hb_000574_080--Hb_001627_070 Hb_012184_020 Hb_012184_020 Hb_000574_080--Hb_012184_020 Hb_002395_010 Hb_002395_010 Hb_000574_080--Hb_002395_010 Hb_005622_090 Hb_005622_090 Hb_000574_080--Hb_005622_090 Hb_007219_010 Hb_007219_010 Hb_000574_080--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_000574_080--Hb_059280_010 Hb_001627_070--Hb_012184_020 Hb_001627_070--Hb_002395_010 Hb_001627_070--Hb_005622_090 Hb_001627_070--Hb_007219_010 Hb_001627_070--Hb_059280_010 Hb_012184_020--Hb_002395_010 Hb_012184_020--Hb_005622_090 Hb_010172_020 Hb_010172_020 Hb_012184_020--Hb_010172_020 Hb_012184_020--Hb_007219_010 Hb_002395_010--Hb_005622_090 Hb_002395_010--Hb_010172_020 Hb_002395_010--Hb_007219_010 Hb_005622_090--Hb_010172_020 Hb_005224_020 Hb_005224_020 Hb_005622_090--Hb_005224_020 Hb_007219_010--Hb_059280_010 Hb_002276_110 Hb_002276_110 Hb_007219_010--Hb_002276_110 Hb_004567_080 Hb_004567_080 Hb_007219_010--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_007219_010--Hb_004643_030 Hb_059280_010--Hb_002276_110 Hb_059280_010--Hb_004567_080 Hb_059280_010--Hb_004643_030 Hb_177343_020 Hb_177343_020 Hb_059280_010--Hb_177343_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0540599 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.69959

CAGE analysis