Hb_010172_020

Information

Type -
Description -
Location Contig10172: 26413-27975
Sequence    

Annotation

kegg
ID cit:102628190
description tyrosine/DOPA decarboxylase 3-like
nr
ID XP_012072185.1
description PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
swissprot
ID P54769
description Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1
trembl
ID A0A067KPF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04665 PE=3 SV=1
Gene Ontology
ID GO:0016831
description tyrosine dopa decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_020 0.0 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
2 Hb_003144_040 0.0339155335 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
3 Hb_005622_090 0.0457123656 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
4 Hb_002395_010 0.0457974457 - - -
5 Hb_012184_020 0.0462909174 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001627_070 0.0504876041 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
7 Hb_000574_080 0.0548586826 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_003144_020 0.0624178788 - - (R)-limonene synthase, putative [Ricinus communis]
9 Hb_005224_020 0.0657984975 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
10 Hb_131816_010 0.0697923595 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_104509_010 0.0712165861 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
12 Hb_002835_420 0.0745206771 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
13 Hb_007219_010 0.0766183184 - - -
14 Hb_005914_030 0.0775145462 - - -
15 Hb_006302_050 0.0780146797 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
16 Hb_154980_010 0.0787680194 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
17 Hb_000326_100 0.0798423979 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
18 Hb_106850_010 0.0816214593 - - photosystem II protein D2 [Lactuca sativa]
19 Hb_059280_010 0.0823102508 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
20 Hb_002276_110 0.0846697566 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010172_020 Hb_010172_020 Hb_003144_040 Hb_003144_040 Hb_010172_020--Hb_003144_040 Hb_005622_090 Hb_005622_090 Hb_010172_020--Hb_005622_090 Hb_002395_010 Hb_002395_010 Hb_010172_020--Hb_002395_010 Hb_012184_020 Hb_012184_020 Hb_010172_020--Hb_012184_020 Hb_001627_070 Hb_001627_070 Hb_010172_020--Hb_001627_070 Hb_000574_080 Hb_000574_080 Hb_010172_020--Hb_000574_080 Hb_003144_040--Hb_001627_070 Hb_003144_040--Hb_012184_020 Hb_003144_040--Hb_000574_080 Hb_003144_040--Hb_002395_010 Hb_003144_040--Hb_005622_090 Hb_005622_090--Hb_002395_010 Hb_005622_090--Hb_012184_020 Hb_005622_090--Hb_001627_070 Hb_005622_090--Hb_000574_080 Hb_005224_020 Hb_005224_020 Hb_005622_090--Hb_005224_020 Hb_002395_010--Hb_012184_020 Hb_002395_010--Hb_001627_070 Hb_002395_010--Hb_000574_080 Hb_007219_010 Hb_007219_010 Hb_002395_010--Hb_007219_010 Hb_012184_020--Hb_001627_070 Hb_012184_020--Hb_000574_080 Hb_012184_020--Hb_007219_010 Hb_001627_070--Hb_000574_080 Hb_001627_070--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_001627_070--Hb_059280_010 Hb_000574_080--Hb_007219_010 Hb_000574_080--Hb_059280_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0130131 0.0610477 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.04493

CAGE analysis