Hb_003144_040

Information

Type -
Description -
Location Contig3144: 64389-68329
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID B9T536
description Terpene synthase 10 OS=Ricinus communis GN=TPS10 PE=2 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0009507
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003144_040 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_010172_020 0.0339155335 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
3 Hb_001627_070 0.060584353 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
4 Hb_012184_020 0.0611827386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_080 0.0618881456 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_002395_010 0.0620420212 - - -
7 Hb_005622_090 0.0625902609 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
8 Hb_003144_020 0.0705207047 - - (R)-limonene synthase, putative [Ricinus communis]
9 Hb_007219_010 0.0751931156 - - -
10 Hb_059280_010 0.0795732384 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
11 Hb_004208_040 0.0800766848 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
12 Hb_002835_420 0.0813668404 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
13 Hb_002276_110 0.0814535118 - - protein binding protein, putative [Ricinus communis]
14 Hb_154980_010 0.0821253345 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
15 Hb_131816_010 0.0847170067 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_000326_100 0.0866908423 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
17 Hb_104509_010 0.0870318029 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
18 Hb_005224_020 0.0872581617 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
19 Hb_106850_010 0.0900643793 - - photosystem II protein D2 [Lactuca sativa]
20 Hb_006302_050 0.0932388872 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]

Gene co-expression network

sample Hb_003144_040 Hb_003144_040 Hb_010172_020 Hb_010172_020 Hb_003144_040--Hb_010172_020 Hb_001627_070 Hb_001627_070 Hb_003144_040--Hb_001627_070 Hb_012184_020 Hb_012184_020 Hb_003144_040--Hb_012184_020 Hb_000574_080 Hb_000574_080 Hb_003144_040--Hb_000574_080 Hb_002395_010 Hb_002395_010 Hb_003144_040--Hb_002395_010 Hb_005622_090 Hb_005622_090 Hb_003144_040--Hb_005622_090 Hb_010172_020--Hb_005622_090 Hb_010172_020--Hb_002395_010 Hb_010172_020--Hb_012184_020 Hb_010172_020--Hb_001627_070 Hb_010172_020--Hb_000574_080 Hb_001627_070--Hb_000574_080 Hb_001627_070--Hb_012184_020 Hb_001627_070--Hb_002395_010 Hb_001627_070--Hb_005622_090 Hb_007219_010 Hb_007219_010 Hb_001627_070--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_001627_070--Hb_059280_010 Hb_012184_020--Hb_002395_010 Hb_012184_020--Hb_005622_090 Hb_012184_020--Hb_000574_080 Hb_012184_020--Hb_007219_010 Hb_000574_080--Hb_002395_010 Hb_000574_080--Hb_005622_090 Hb_000574_080--Hb_007219_010 Hb_000574_080--Hb_059280_010 Hb_002395_010--Hb_005622_090 Hb_002395_010--Hb_007219_010 Hb_005224_020 Hb_005224_020 Hb_005622_090--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.136769 0.605699 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0368252 0 0 0 23.0613

CAGE analysis