Hb_005622_090

Information

Type -
Description -
Location Contig5622: 73815-75752
Sequence    

Annotation

kegg
ID cic:CICLE_v10027074mg
description hypothetical protein
nr
ID XP_006427250.1
description hypothetical protein CICLE_v10027074mg [Citrus clementina]
swissprot
ID Q9LW07
description Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1
trembl
ID V4SNJ3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027074mg PE=3 SV=1
Gene Ontology
ID GO:0004650
description probable polygalacturonase at3g15720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005622_090 0.0 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
2 Hb_002395_010 0.0022517949 - - -
3 Hb_012184_020 0.0067224117 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001627_070 0.0208608169 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
5 Hb_000574_080 0.0297666468 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_010172_020 0.0457123656 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
7 Hb_005224_020 0.0587552796 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_007219_010 0.0609709773 - - -
9 Hb_003144_040 0.0625902609 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_003144_020 0.0628372128 - - (R)-limonene synthase, putative [Ricinus communis]
11 Hb_005914_030 0.0631319206 - - -
12 Hb_059280_010 0.0679443496 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_104509_010 0.0698128129 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
14 Hb_002276_110 0.0707689597 - - protein binding protein, putative [Ricinus communis]
15 Hb_006302_050 0.0729244662 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
16 Hb_002835_420 0.0753304341 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
17 Hb_000326_100 0.07848431 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
18 Hb_131816_010 0.0804131311 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
19 Hb_106850_010 0.0805256114 - - photosystem II protein D2 [Lactuca sativa]
20 Hb_126973_010 0.0805821023 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]

Gene co-expression network

sample Hb_005622_090 Hb_005622_090 Hb_002395_010 Hb_002395_010 Hb_005622_090--Hb_002395_010 Hb_012184_020 Hb_012184_020 Hb_005622_090--Hb_012184_020 Hb_001627_070 Hb_001627_070 Hb_005622_090--Hb_001627_070 Hb_000574_080 Hb_000574_080 Hb_005622_090--Hb_000574_080 Hb_010172_020 Hb_010172_020 Hb_005622_090--Hb_010172_020 Hb_005224_020 Hb_005224_020 Hb_005622_090--Hb_005224_020 Hb_002395_010--Hb_012184_020 Hb_002395_010--Hb_001627_070 Hb_002395_010--Hb_000574_080 Hb_002395_010--Hb_010172_020 Hb_007219_010 Hb_007219_010 Hb_002395_010--Hb_007219_010 Hb_012184_020--Hb_001627_070 Hb_012184_020--Hb_000574_080 Hb_012184_020--Hb_010172_020 Hb_012184_020--Hb_007219_010 Hb_001627_070--Hb_000574_080 Hb_001627_070--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_001627_070--Hb_059280_010 Hb_000574_080--Hb_007219_010 Hb_000574_080--Hb_059280_010 Hb_003144_040 Hb_003144_040 Hb_010172_020--Hb_003144_040 Hb_010172_020--Hb_001627_070 Hb_010172_020--Hb_000574_080 Hb_005914_030 Hb_005914_030 Hb_005224_020--Hb_005914_030 Hb_003144_020 Hb_003144_020 Hb_005224_020--Hb_003144_020 Hb_104509_010 Hb_104509_010 Hb_005224_020--Hb_104509_010 Hb_000959_380 Hb_000959_380 Hb_005224_020--Hb_000959_380 Hb_006302_050 Hb_006302_050 Hb_005224_020--Hb_006302_050 Hb_131816_010 Hb_131816_010 Hb_005224_020--Hb_131816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0296134 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.46197

CAGE analysis