Hb_001627_070

Information

Type transcription factor
Description TF Family: MIKC
Location Contig1627: 102443-107636
Sequence    

Annotation

kegg
ID tcc:TCM_014337
description K-box region and MADS-box transcription factor family protein
nr
ID XP_010257958.1
description PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
swissprot
ID Q39685
description MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
trembl
ID A0A061FZ27
description K-box region and MADS-box transcription factor family protein OS=Theobroma cacao GN=TCM_014337 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein cmb1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001627_070 0.0 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
2 Hb_000574_080 0.0089421452 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_012184_020 0.0141530171 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002395_010 0.0186156123 - - -
5 Hb_005622_090 0.0208608169 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
6 Hb_007219_010 0.0403982253 - - -
7 Hb_059280_010 0.0474481762 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
8 Hb_002276_110 0.0503054471 - - protein binding protein, putative [Ricinus communis]
9 Hb_010172_020 0.0504876041 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
10 Hb_003144_040 0.060584353 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_004161_040 0.0725617103 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
12 Hb_003144_020 0.0742989633 - - (R)-limonene synthase, putative [Ricinus communis]
13 Hb_002835_420 0.0743217404 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
14 Hb_002704_090 0.0762074973 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005224_020 0.0762394067 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_005914_030 0.0798016896 - - -
17 Hb_104509_010 0.0800548348 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
18 Hb_126973_010 0.0801568391 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
19 Hb_004567_080 0.0816297884 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_004643_030 0.0816909312 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001627_070 Hb_001627_070 Hb_000574_080 Hb_000574_080 Hb_001627_070--Hb_000574_080 Hb_012184_020 Hb_012184_020 Hb_001627_070--Hb_012184_020 Hb_002395_010 Hb_002395_010 Hb_001627_070--Hb_002395_010 Hb_005622_090 Hb_005622_090 Hb_001627_070--Hb_005622_090 Hb_007219_010 Hb_007219_010 Hb_001627_070--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_001627_070--Hb_059280_010 Hb_000574_080--Hb_012184_020 Hb_000574_080--Hb_002395_010 Hb_000574_080--Hb_005622_090 Hb_000574_080--Hb_007219_010 Hb_000574_080--Hb_059280_010 Hb_012184_020--Hb_002395_010 Hb_012184_020--Hb_005622_090 Hb_010172_020 Hb_010172_020 Hb_012184_020--Hb_010172_020 Hb_012184_020--Hb_007219_010 Hb_002395_010--Hb_005622_090 Hb_002395_010--Hb_010172_020 Hb_002395_010--Hb_007219_010 Hb_005622_090--Hb_010172_020 Hb_005224_020 Hb_005224_020 Hb_005622_090--Hb_005224_020 Hb_007219_010--Hb_059280_010 Hb_002276_110 Hb_002276_110 Hb_007219_010--Hb_002276_110 Hb_004567_080 Hb_004567_080 Hb_007219_010--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_007219_010--Hb_004643_030 Hb_059280_010--Hb_002276_110 Hb_059280_010--Hb_004567_080 Hb_059280_010--Hb_004643_030 Hb_177343_020 Hb_177343_020 Hb_059280_010--Hb_177343_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0292397 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.04216

CAGE analysis