Hb_002276_110

Information

Type -
Description -
Location Contig2276: 122357-123064
Sequence    

Annotation

kegg
ID rcu:RCOM_1514570
description protein binding protein, putative
nr
ID XP_002511547.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8GYT9
description E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2
trembl
ID B9R972
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1514570 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase cip8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23740: 124008-124283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_110 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_059280_010 0.0028849663 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
3 Hb_007219_010 0.0099912498 - - -
4 Hb_004567_080 0.0317829135 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
5 Hb_004643_030 0.0318451901 - - conserved hypothetical protein [Ricinus communis]
6 Hb_177343_020 0.0382504185 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
7 Hb_000574_080 0.0414511753 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_000627_060 0.0479201189 - - -
9 Hb_007741_060 0.0487955921 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
10 Hb_001627_070 0.0503054471 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
11 Hb_035265_020 0.0531898935 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_006435_020 0.0580594147 - - sugar transporter, putative [Ricinus communis]
13 Hb_002704_090 0.0580904406 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002093_010 0.0581247876 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
15 Hb_000648_090 0.0639626772 - - -
16 Hb_004161_040 0.0640137038 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
17 Hb_012184_020 0.0642208091 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002395_010 0.0685807864 - - -
19 Hb_005622_090 0.0707689597 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
20 Hb_002421_170 0.0727202092 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]

Gene co-expression network

sample Hb_002276_110 Hb_002276_110 Hb_059280_010 Hb_059280_010 Hb_002276_110--Hb_059280_010 Hb_007219_010 Hb_007219_010 Hb_002276_110--Hb_007219_010 Hb_004567_080 Hb_004567_080 Hb_002276_110--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_002276_110--Hb_004643_030 Hb_177343_020 Hb_177343_020 Hb_002276_110--Hb_177343_020 Hb_000574_080 Hb_000574_080 Hb_002276_110--Hb_000574_080 Hb_059280_010--Hb_007219_010 Hb_059280_010--Hb_004567_080 Hb_059280_010--Hb_004643_030 Hb_059280_010--Hb_000574_080 Hb_059280_010--Hb_177343_020 Hb_007219_010--Hb_000574_080 Hb_001627_070 Hb_001627_070 Hb_007219_010--Hb_001627_070 Hb_007219_010--Hb_004567_080 Hb_007219_010--Hb_004643_030 Hb_004567_080--Hb_004643_030 Hb_004567_080--Hb_177343_020 Hb_035265_020 Hb_035265_020 Hb_004567_080--Hb_035265_020 Hb_000648_090 Hb_000648_090 Hb_004567_080--Hb_000648_090 Hb_007741_060 Hb_007741_060 Hb_004567_080--Hb_007741_060 Hb_004643_030--Hb_177343_020 Hb_004643_030--Hb_035265_020 Hb_004643_030--Hb_000648_090 Hb_004643_030--Hb_007741_060 Hb_177343_020--Hb_035265_020 Hb_177343_020--Hb_000648_090 Hb_177343_020--Hb_007741_060 Hb_002421_170 Hb_002421_170 Hb_177343_020--Hb_002421_170 Hb_000574_080--Hb_001627_070 Hb_012184_020 Hb_012184_020 Hb_000574_080--Hb_012184_020 Hb_002395_010 Hb_002395_010 Hb_000574_080--Hb_002395_010 Hb_005622_090 Hb_005622_090 Hb_000574_080--Hb_005622_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0260808 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.495988

CAGE analysis